Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | V | W A alpha_energies (vibeview.qvf.WavefunctionGTOData attribute) alpha_occupations (vibeview.qvf.WavefunctionGTOData attribute) Atom (class in vibeview.qvf) atom_name (vibeview.qvf.Atom attribute) atom_populations (vibeview.qvf.WavefunctionGTOData attribute) atomic_number (vibeview.qvf.Atom attribute) AtomPropertiesData (class in vibeview.qvf) atoms (vibeview.qvf.ReactionPathData attribute) (vibeview.qvf.ScanSurfaceData attribute) (vibeview.qvf.StructureData attribute) (vibeview.qvf.TrajectoryData attribute) (vibeview.qvf.VibrationsData attribute) ATTACHMENT_DOWNLOAD_MAX_BYTES (vibeview.qvf.QVFReader attribute) attachment_roles (vibeview.qvf.RunRecordData attribute) auto_open (vibeview.qvf.ViewerDefaults attribute) axis_a (vibeview.qvf.ScanSurfaceData attribute) axis_b (vibeview.qvf.ScanSurfaceData attribute) B b_factor (vibeview.qvf.Atom attribute) backbone_trace() (vibeview.qvf.StructureData method) BandsData (class in vibeview.qvf) basis (vibeview.qvf.JobSpecData attribute) BasisShell (class in vibeview.qvf) beta_energies (vibeview.qvf.WavefunctionGTOData attribute) beta_occupations (vibeview.qvf.WavefunctionGTOData attribute) bibtex (vibeview.qvf.CitationsData attribute) bond_paths (vibeview.qvf.QTAIMData attribute) BondOrdersData (class in vibeview.qvf) bonds (vibeview.qvf.StructureData attribute) C ca_residues() (vibeview.qvf.StructureData method) calculation (vibeview.qvf.Source attribute) capture_structure() (in module vibeview.api) capture_volume() (in module vibeview.api) center (vibeview.qvf.BasisShell attribute) centroids_bohr (vibeview.qvf.WavefunctionGTOData attribute) chain_id (vibeview.qvf.Atom attribute) chain_ids() (vibeview.qvf.StructureData method) chains() (vibeview.qvf.StructureData method) charge (vibeview.qvf.JobSpecData attribute) checkpoint_info (vibeview.qvf.QVFReader property) CitationsData (class in vibeview.qvf) clamp_replication() (in module vibeview.qvf) classify_section() (in module vibeview.kinds) clear_edit_overlay() (vibeview.qvf.QVFReader method) clear_wavefunction_overlays() (vibeview.qvf.QVFReader method) close() (vibeview.qvf.QVFReader method) codename_for_current() (in module vibeview.codenames) codename_for_version() (in module vibeview.codenames) coefficients (vibeview.qvf.BasisShell attribute) command (vibeview.qvf.RunRecordData attribute) component (vibeview.qvf.Section attribute) coordinate_a_label (vibeview.qvf.ScanSurfaceData attribute) coordinate_a_unit (vibeview.qvf.ScanSurfaceData attribute) coordinate_b_label (vibeview.qvf.ScanSurfaceData attribute) coordinate_b_unit (vibeview.qvf.ScanSurfaceData attribute) coords (vibeview.qvf.ReactionPathData attribute) (vibeview.qvf.TrajectoryData attribute) CriticalSectionUnsupportedError D diff() (in module vibeview.api) dim (vibeview.qvf.ReactionPathData attribute) (vibeview.qvf.StructureData attribute) dim_per_frame (vibeview.qvf.ReactionPathData attribute) dipole_moment (vibeview.qvf.QVFReader property) displacements (vibeview.qvf.VibrationsData attribute) dos (vibeview.qvf.PhononDOSData attribute) DOSCOOPData (class in vibeview.qvf) dtype (vibeview.qvf.MemberSpec attribute) E eigenvalues (vibeview.qvf.BandsData attribute) energies (vibeview.qvf.DOSCOOPData attribute) (vibeview.qvf.EquationOfStateData attribute) (vibeview.qvf.ReactionPathData attribute) (vibeview.qvf.ScanSurfaceData attribute) (vibeview.qvf.TrajectoryData attribute) (vibeview.qvf.WavefunctionGTOData attribute) energy_eh (vibeview.qvf.ReactionWaypoint attribute) EPRData (class in vibeview.qvf) EquationOfStateData (class in vibeview.qvf) exit_status (vibeview.qvf.RunRecordData attribute) exponents (vibeview.qvf.BasisShell attribute) export_xyz() (in module vibeview.api) F fermi (vibeview.qvf.BandsData attribute) files (vibeview.qvf.RunRecordData attribute) finished_utc (vibeview.qvf.RunRecordData attribute) fit (vibeview.qvf.EquationOfStateData attribute) format (vibeview.qvf.MemberSpec attribute) frame_index (vibeview.qvf.ReactionWaypoint attribute) frame_volumes (vibeview.qvf.ReactionPathData attribute) frequencies (vibeview.qvf.PhononBandsData attribute) (vibeview.qvf.PhononDOSData attribute) (vibeview.qvf.SpectraData attribute) (vibeview.qvf.VibrationsData attribute) functional (vibeview.qvf.JobSpecData attribute) G geometries (vibeview.qvf.ScanSurfaceData attribute) get_section() (vibeview.qvf.QVFReader method) get_structure() (in module vibeview.api) get_table() (in module vibeview.api) get_volume() (in module vibeview.api) GridData (class in vibeview.qvf) H has_edit_overlay (vibeview.qvf.QVFReader property) has_residues (vibeview.qvf.StructureData property) has_section() (in module vibeview.api) (vibeview.qvf.QVFReader method) hirshfeld_charges (vibeview.qvf.AtomPropertiesData attribute) I iao_charges (vibeview.qvf.AtomPropertiesData attribute) id (vibeview.qvf.Section attribute) infer_bonds() (vibeview.qvf.QVFReader method) info() (in module vibeview.api) input_size (vibeview.qvf.RunRecordData attribute) input_text (vibeview.qvf.RunRecordData attribute) integrated (vibeview.qvf.DOSCOOPData attribute) intensities (vibeview.qvf.SpectraData attribute) is_lazy_kind() (in module vibeview.kinds) iterations (vibeview.qvf.SCFHistoryData attribute) J job_type (vibeview.qvf.JobSpecData attribute) JobSpecData (class in vibeview.qvf) K k_point (vibeview.qvf.WavefunctionGTOData attribute) kind (vibeview.qvf.ReactionWaypoint attribute) (vibeview.qvf.Section attribute) kpath (vibeview.qvf.BandsData attribute) kpoints (vibeview.qvf.JobSpecData attribute) L l (vibeview.qvf.BasisShell attribute) label (vibeview.qvf.ReactionWaypoint attribute) lattice (vibeview.qvf.ReactionPathData attribute) lattice_vectors (vibeview.qvf.StructureData attribute) lifecycle_warnings() (vibeview.qvf.QVFReader method) localization_method (vibeview.qvf.WavefunctionGTOData attribute) loewdin_charges (vibeview.qvf.AtomPropertiesData attribute) log_size (vibeview.qvf.RunRecordData attribute) log_text (vibeview.qvf.RunRecordData attribute) M Manifest (class in vibeview.qvf) manifest (vibeview.qvf.QVFReader property) ManifestValidationError members (vibeview.qvf.Section attribute) MemberSpec (class in vibeview.qvf) meta (vibeview.qvf.DOSCOOPData attribute) (vibeview.qvf.PhononDOSData attribute) method (vibeview.qvf.BondOrdersData attribute) (vibeview.qvf.JobSpecData attribute) mo_coefficients (vibeview.qvf.WavefunctionGTOData attribute) mo_coefficients_alpha (vibeview.qvf.WavefunctionGTOData attribute) mo_coefficients_beta (vibeview.qvf.WavefunctionGTOData attribute) model_config (vibeview.qvf.Manifest attribute) (vibeview.qvf.MemberSpec attribute) (vibeview.qvf.Section attribute) (vibeview.qvf.Source attribute) (vibeview.qvf.ViewerDefaults attribute) module vibeview.api vibeview.codenames vibeview.kinds vibeview.qvf mulliken_charges (vibeview.qvf.AtomPropertiesData attribute) multiplicity (vibeview.qvf.JobSpecData attribute) N n_ao (vibeview.qvf.WavefunctionGTOData attribute) n_centres (vibeview.qvf.WavefunctionGTOData attribute) NMRData (class in vibeview.qvf) O occupation_semantics (vibeview.qvf.WavefunctionGTOData attribute) occupations (vibeview.qvf.WavefunctionGTOData attribute) options (vibeview.qvf.JobSpecData attribute) orbital_kind (vibeview.qvf.WavefunctionGTOData attribute) origin (vibeview.qvf.GridData attribute) P pairs (vibeview.qvf.BondOrdersData attribute) path (vibeview.qvf.MemberSpec attribute) (vibeview.qvf.QVFReader property) pbc (vibeview.qvf.StructureData attribute) PhononBandsData (class in vibeview.qvf) PhononDOSData (class in vibeview.qvf) points (vibeview.qvf.QTAIMData attribute) position (vibeview.qvf.Atom attribute) program (vibeview.qvf.RunRecordData attribute) (vibeview.qvf.Source attribute) program_version (vibeview.qvf.RunRecordData attribute) projections (vibeview.qvf.DOSCOOPData attribute) provenance (vibeview.qvf.QVFReader property) pure (vibeview.qvf.BasisShell attribute) (vibeview.qvf.WavefunctionGTOData attribute) Q qpath (vibeview.qvf.PhononBandsData attribute) QTAIMData (class in vibeview.qvf) qvf_version (vibeview.qvf.Manifest attribute) QVFError QVFOpenError QVFReader (class in vibeview.qvf) QVFSource (in module vibeview.qvf) R raw (vibeview.qvf.EPRData attribute) (vibeview.qvf.JobSpecData attribute) (vibeview.qvf.NMRData attribute) (vibeview.qvf.SymmetryData attribute) reaction_coordinate (vibeview.qvf.ReactionPathData attribute) (vibeview.qvf.ReactionWaypointsData attribute) reaction_coordinate_label (vibeview.qvf.ReactionPathData attribute) reaction_coordinate_unit (vibeview.qvf.ReactionPathData attribute) ReactionPathData (class in vibeview.qvf) ReactionWaypoint (class in vibeview.qvf) ReactionWaypointsData (class in vibeview.qvf) read_atom_properties() (vibeview.qvf.QVFReader method) read_bands() (vibeview.qvf.QVFReader method) read_bond_orders() (vibeview.qvf.QVFReader method) read_bonds() (vibeview.qvf.QVFReader method) read_citations() (vibeview.qvf.QVFReader method) read_dos_coop() (vibeview.qvf.QVFReader method) read_epr() (vibeview.qvf.QVFReader method) read_equation_of_state() (vibeview.qvf.QVFReader method) read_job_spec() (vibeview.qvf.QVFReader method) read_nmr() (vibeview.qvf.QVFReader method) read_phonon_bands() (vibeview.qvf.QVFReader method) read_phonon_dos() (vibeview.qvf.QVFReader method) read_reaction_path() (vibeview.qvf.QVFReader method) read_reaction_waypoints() (vibeview.qvf.QVFReader method) read_run_record() (vibeview.qvf.QVFReader method) read_run_record_attachment() (vibeview.qvf.QVFReader method) read_run_record_attachment_bytes() (vibeview.qvf.QVFReader method) read_scan_surface() (vibeview.qvf.QVFReader method) read_scf_history() (vibeview.qvf.QVFReader method) read_spectra() (vibeview.qvf.QVFReader method) read_structure() (vibeview.qvf.QVFReader method) read_symmetry() (vibeview.qvf.QVFReader method) read_topology_qtaim() (vibeview.qvf.QVFReader method) read_trajectory() (vibeview.qvf.QVFReader method) read_vibrations() (vibeview.qvf.QVFReader method) read_volume_data() (vibeview.qvf.QVFReader method) read_volume_grid() (vibeview.qvf.QVFReader method) read_wavefunction_gto() (vibeview.qvf.QVFReader method) relocalization (vibeview.qvf.WavefunctionGTOData attribute) render_terminal() (in module vibeview.api) residue_name (vibeview.qvf.Atom attribute) residue_seq (vibeview.qvf.Atom attribute) run_record_attachments() (vibeview.qvf.QVFReader method) run_record_position() (vibeview.qvf.QVFReader method) run_record_sections() (vibeview.qvf.QVFReader method) run_status (vibeview.qvf.QVFReader property) RunRecordData (class in vibeview.qvf) S ScanSurfaceData (class in vibeview.qvf) SCFHistoryData (class in vibeview.qvf) secondary_structure() (vibeview.qvf.StructureData method) Section (class in vibeview.qvf) section_error() (vibeview.qvf.QVFReader method) section_is_partial() (vibeview.qvf.QVFReader method) SectionNotFoundError sections (vibeview.qvf.Manifest attribute) (vibeview.qvf.QVFReader property) sections() (in module vibeview.api) sequence (vibeview.qvf.RunRecordData attribute) set_edit_overlay() (vibeview.qvf.QVFReader method) set_wavefunction_overlay() (vibeview.qvf.QVFReader method) sha256 (vibeview.qvf.MemberSpec attribute) SHA256MismatchError shape (vibeview.qvf.GridData attribute) (vibeview.qvf.MemberSpec attribute) shells (vibeview.qvf.WavefunctionGTOData attribute) slice_qvf() (in module vibeview.api) Source (class in vibeview.qvf) source (vibeview.qvf.Manifest attribute) (vibeview.qvf.QVFReader property) SpectraData (class in vibeview.qvf) spin (vibeview.qvf.WavefunctionGTOData attribute) spin_populations (vibeview.qvf.AtomPropertiesData attribute) started_utc (vibeview.qvf.RunRecordData attribute) structure_ref (vibeview.qvf.WavefunctionGTOData attribute) StructureData (class in vibeview.qvf) supplied_chains (vibeview.qvf.StructureData attribute) supplied_residues (vibeview.qvf.StructureData attribute) supplied_secondary_structure (vibeview.qvf.StructureData attribute) symbol (vibeview.qvf.Atom attribute) symmetry_labels (vibeview.qvf.WavefunctionGTOData attribute) symmetry_labels_beta (vibeview.qvf.WavefunctionGTOData attribute) SymmetryData (class in vibeview.qvf) T tasks (vibeview.qvf.JobSpecData attribute) thermochemistry (vibeview.qvf.QVFReader property) trajectory_ref (vibeview.qvf.ReactionWaypointsData attribute) (vibeview.qvf.Section attribute) TrajectoryData (class in vibeview.qvf) V validate() (in module vibeview.api) version (vibeview.qvf.Source attribute) version_label() (in module vibeview.codenames) vibeview.api module vibeview.codenames module vibeview.kinds module vibeview.qvf module VibrationsData (class in vibeview.qvf) viewer_defaults (vibeview.qvf.Manifest attribute) (vibeview.qvf.QVFReader property) ViewerDefaults (class in vibeview.qvf) volume_frame_index (vibeview.qvf.ReactionPathData attribute) volume_grid (vibeview.qvf.ReactionPathData attribute) volume_isovalue (vibeview.qvf.ReactionPathData attribute) volume_label (vibeview.qvf.ReactionPathData attribute) volumes (vibeview.qvf.EquationOfStateData attribute) voxel_vectors (vibeview.qvf.GridData attribute) W wavefunction_overlay_ids (vibeview.qvf.QVFReader property) WavefunctionGTOData (class in vibeview.qvf) waypoints (vibeview.qvf.ReactionPathData attribute) (vibeview.qvf.ReactionWaypointsData attribute)