Periodic-SCF methods: BIPOLE, GDF, GPW / GAPW¶
This page is the comparative tour of the periodic Hartree-Fock and Kohn-Sham machinery in vibe-qc. It is meant to be the page you read first when you need to pick a route for a new crystalline (or periodic slab / wire) calculation. The per-method deep dives are in the specialised pages linked from each section.
Periodic boundary conditions are vibe-qc’s headline focus, and surface chemistry (slab single-points, adsorption energies, reaction-path search, transition-state characterisation) is the flagship workflow. Section 7 walks the surface-reactions stack end-to-end; sections 2 to 5 are the per-kernel theory plus implementation reference that workflow sits on top of.
Note
The cyclic cluster model (CCM): a real-space alternative. Beyond the
k-point routes on this page, vibe-qc’s signature periodic approach is the
cyclic cluster model, which treats a crystal as a
finite cyclic cluster rather than sampling the Brillouin zone. Two independent
experimental ab-initio CCM lines ship in the current release:
Γ-CCM / aiccm2026dev-a
(union-and-weight/Wigner–Seitz integral weighting) and
χ-CCM / aiccm2026dev-b
(finite-translation-group characters; 3-D SCF and correlation only). They are
distinct approaches; a matched exchange-q=0 convention is necessary for a
comparison but does not define an approach delta. The semi-empirical (MSINDO)
CCM is also available for bulk, surface, and adsorption calculations.
See also
periodic_systems.md: thePeriodicSystemcontainer, Born-von Karman PBC contract, and basic 1D / 2D / 3D setup.crystal_lattices.md: the 14 Bravais lattices, with visualisations and worked examples for the common cases (rocksalt, diamond, perovskite, HCP, wurtzite, rutile, corundum, alpha-quartz, graphene).k_points.md: Monkhorst-Pack mesh generation and Brillouin-zone sampling.bipole.md: full BIPOLE driver reference.cyclic_cluster_model.md: the cyclic cluster model, vibe-qc’s real-space (Born-von Karman) alternative to the k-point routes on this page.density_fitting.md: RIJ / RIJK / RIJCOSX for molecules, plus the GDF kernel reuse for periodic Gamma-only.multi_k_scf.md: the multi-k SCF surface, smearing for metals, and the multi-k GDF roadmap.ewald.md: the Ewald summation primitives that the one-electron and the long-range J builds share.
1. Dimensionality model and the periodic Coulomb problem¶
Every periodic calculation in vibe-qc lives in a single container,
PeriodicSystem(dim, lattice, unit_cell):
import numpy as np
from vibeqc import Atom, PeriodicSystem
# 1D atomic wire (H-H along x). Columns 1 and 2 are vacuum.
sys_1d = PeriodicSystem(
dim=1,
lattice=np.diag([4.0, 30.0, 30.0]),
unit_cell=[Atom(1, [0, 0, 0]),
Atom(1, [0, 0, 1.4])],
)
# 2D graphene-like slab. Prefer vq.slab_2d: it takes only the two
# in-plane vectors and synthesizes the (non-physical) third column for
# you. The SCF is invariant to that column; it is not a vacuum gap.
sys_2d = vq.slab_2d(
[4.6487, 0.0000, 0.0], # a1 (bohr)
[2.3244, 4.0259, 0.0], # a2 (bohr)
[Atom(6, [0.0000, 0.0000, 0.0]),
Atom(6, [2.3244, 1.3420, 0.0])],
)
# 3D crystalline bulk (silicon, conventional cubic cell, bohr).
sys_3d = PeriodicSystem(
dim=3,
lattice=np.diag([5.4, 5.4, 5.4]),
unit_cell=[Atom(14, [0, 0, 0]),
Atom(14, [0.25, 0.25, 0.25])],
)
dim selects how many of the three lattice columns are physical.
The lattice matrix is always 3x3 and may be triclinic. Reciprocal
vectors are generated automatically as \(2\pi A^{-T}\) so that
\(a_i \cdot b_j = 2\pi \delta_{ij}\) holds for any cell metric. There
are no cubic-only or orthorhombic-only fast paths in the public
periodic API: methods accept the full lattice matrix and the
test suite pins triclinic, monoclinic, orthorhombic, tetragonal,
trigonal, hexagonal, and cubic metrics on every periodic route.
Why a naive lattice sum diverges¶
The fundamental difficulty is that the periodic two-electron operator,
contains a tail that decays like \(1/|\mathbf{T}|\). In 3D the sum of \(1/|\mathbf{T}|\) over a Bravais lattice is conditionally convergent: it depends on the order of summation, and a brute real-space truncation can be off by tens or hundreds of Hartree on ionic crystals like MgO. The same holds for the electron-nucleus and nucleus-nucleus interactions, where it is just the classical Madelung problem. Periodic codes therefore always do one of three things:
Split the Coulomb interaction. Write \(1/r = \mathrm{erfc}(\omega r)/r + \mathrm{erf}(\omega r)/r\). The short-range piece is summed in real space; the long-range smooth piece is summed in reciprocal space. This is the Ewald construction. BIPOLE and the GDF Ewald-3D path do this; so does the existing FFT-Poisson driver.
Density-fit on a finite auxiliary basis. Project the AO pair density onto a charge-compensated auxiliary basis so that the divergent monopole contribution is cancelled at the source. The resulting fit Coulomb metric is finite. This is the GDF approach (Gaussian density fitting).
Carry the density on a uniform grid and solve the Poisson equation with FFT. Pin \(V(\mathbf{G} = 0) = 0\) for the neutral cell. The smooth-grid Hartree-J is then an \(\mathcal{O}(N_g \log N_g)\) operation, and a Gaussian augmentation around each nucleus restores all-electron accuracy. This is the GPW / GAPW approach.
vibe-qc ships an implementation of each of these three families.
They coexist, and the active method (with all of its parameters)
is recorded in the .system manifest so reproducibility never
relies on the AUTO heuristic.
Where each method plugs in¶
The user-facing dispatch lives in
PeriodicJKMethod:
import vibeqc as vq
from vibeqc import PeriodicJKMethod
# Three ways to be explicit about the Coulomb route:
result = vq.run_periodic_job(sysp, basis, method="RHF",
jk_method="bipole")
result = vq.run_periodic_job(sysp, basis, method="RHF",
jk_method="gdf")
result = vq.run_periodic_job(sysp, basis, method="RHF",
jk_method=PeriodicJKMethod.GDF)
# Independent finite cyclic-cluster RHF/RKS (experimental):
result = vq.run_periodic_job(sysp, basis, method="RKS", functional="pbe0",
jk_method="aiccm2026dev-b",
kpoints=(4, 4, 4),
aiccm_backend="rijcosx")
jk_method="auto" (the default) branches on the system’s
dimensionality first:
dim=2(a slab): always SLAB_EWALD_2D, the vacuum-free 2D Ewald gauge, for RHF / RKS / UKS. This AUTO choice remains the general route. Closed-shell RHF/RKS may explicitly select the bounded slab-GDF route; unsupported bulk builders still raise rather than returning ana3-dependent energy.dim=1: GDF for RHF / RKS / UHF / UKS. There is no maintained public dim=1 ROHF route.dim=3: GDF for closed-shell RHF / RKS and BIPOLE for open-shell UHF / UKS.
The resolved method (never the literal "auto") is logged in the banner
so a re-run does not depend on the AUTO heuristic version.
A method-by-method status table, kept in sync with
python/vibeqc/periodic_jk_method.py:
For the experimental CCM selectors, Γ-CCM and χ-CCM[1] are distinct construction approaches: union-and-weight/Wigner-Seitz integral weighting and the finite-translation-group character construction, respectively. Comparisons hold the declared exchange-q=0 convention fixed as a comparison constraint; that convention does not identify the constructions.
|
What it dispatches to |
Status |
|---|---|---|
|
Rigorous vacuum-free 2D (slab) Coulomb, the Parry / de Leeuw-Perram gauge. RHF / RKS / UKS at Gamma and multi-k. This is what AUTO selects for |
Production for pure/screened envelopes; full-range RHF/UKS provisional |
|
Native Gaussian density fitting. Closed-shell RHF / RKS / full-range hybrids and maintained-preview ROHF are public at Gamma and multi-k; ROHF uses |
Production in 1D/3D; ROHF maintained preview; verified closed-shell energy + analytic-gradient route in 2D |
|
χ-CCM, the finite-translation-group character construction evaluated on a Γ-centred character mesh. |
Experimental, opt-in; 3-D only |
|
an exact Ewald J-split; multi-k RHF / UHF / RKS / UKS, plus maintained-preview ROHF and ROKS (Gamma + full Monkhorst-Pack meshes, energies only; ROHF and nondegenerate ROKS use integer 2/1/0 occupations, while an exactly degenerate one-electron ROKS shell uses a fixed equal-occupation ensemble; ROKS covers pure functionals and global hybrids) on the corrected-Ewald-exchange EWALD_3D engine; production FD forces plus fixed-cell atomic optimisation; variable-cell work fails closed and analytic gradients remain a gated preview. The public route is 3D-only and rejects |
Production (3D exact route) |
|
4-centre real-space lattice sum with Schwarz screening. Valid only for vacuum-padded molecular-limit cells. |
Diagnostic |
|
Retired (v0.13.0). The Γ-only EWALD_3D path returned a ~2 Ha-wrong energy on cells where periodic AO images overlap (its molecular-limit density convention |
Retired |
|
Gaussian-on-grid collocation + FFT-Poisson Hartree-J on a smooth real-space grid. The dispatcher runs a full SCF for Gamma RHF / maintained-preview ROHF / RKS / UHF / UKS and multi-k RKS, with forces, FD Hessian, +U for RHF/RKS/UHF/UKS at Gamma and RKS at multi-k, smearing, and D3(BJ). Multi-k open-shell +U is not wired. ROHF is 3D Gamma-only with integer occupations and fails closed for gradients, smearing, and the other unsupported envelopes. The standalone |
Production (opt-in warning); ROHF maintained preview |
|
GPW plus per-atom Gaussian augmentation on a fine radial grid for all-electron accuracy. The standard drivers cover Gamma RHF / RKS / UHF / UKS and multi-k RKS, with +U for RHF/RKS/UHF/UKS at Gamma and RKS at multi-k, smearing, and D3(BJ). Multi-k open-shell +U is not wired. At single Gamma, the method-aware |
Production (opt-in warning; analytic HF molecular-limit only) |
|
RI-J plus seminumerical chain-of-spheres exchange K (Neese 2009) on a periodic Becke grid. Gamma RHF uses the dedicated periodic RIJCOSX driver. True multi-k RHF / RKS / UHF / UKS route through the native GDF loop with |
Implemented, experimental periodic COSX |
|
Top-level route not implemented (enum-reserved): range-separated GDF as a standalone |
Roadmap |
|
Continuous fast multipole. Enum-reserved; not implemented. |
Roadmap |
Two periodic method families also expose dedicated entry points in addition to the public runner where noted:
RSGAPW (range-separated GAPW) for range-separated hybrids (HSE06, ωB97X, CAM-B3LYP):
run_periodic_rhf_rsgapwandrun_periodic_rks_rsgapwinperiodic_gapw_range_sep.py. It splits the Coulomb operator with the error function and carries the long-range piece on the plane-wave grid. See § 4.7.Periodic ROHF / ROKS (restricted open-shell HF and KS):
run_rohf_periodic_gamma_ewald3d(Gamma) andrun_rohf_periodic_multi_k_ewald3d(multi-k) inperiodic_rohf_ewald.py/periodic_rohf_multi_k_ewald.py,run_roks_periodic_multi_k_ewald3d(Gamma + multi-k) inperiodic_roks_multi_k_ewald.py,run_krohf_periodic_gdf(Gamma + multi-k, native GDF) inperiodic_rohf_gdf.py, plus the standalone 3D Gamma GPW routesrun_periodic_rohf_gpw/run_periodic_roks_gpwinperiodic_gapw_open_shell.py. See § 3.8.
The method-aware one-centre promotion applies only to the standard Gamma
run_periodic_rhf_gapw / run_periodic_uhf_gapw drivers and their public
run_periodic_job(jk_method="gapw") dispatch. The dedicated RSGAPW and OT
research entry points use separate experimental builders and do not inherit
that default or its molecular-limit validation claim.
Screened hybrids (HSE06) per route. Every periodic driver resolves
its functional through the shared CAM assembly
(vibeqc.periodic_screened_exchange):
K_HF = c_full·K_full + c_sr·K_erfc(ω_screen). Global hybrids (PBE0)
keep the full-range fraction unchanged. Screened hybrids (HSE06,
c_full = 0) build the genuine erfc short-range exchange (a pure
direct lattice sum with no Madelung/exxdiv seam and no bipolar
far-field, the CRYSTAL treatment) on the routes that have that
kernel: BIPOLE, the Ewald drivers (Γ + multi-k, RKS + UKS),
and the slab route (slab_ewald_2d / AUTO on dim=2). Routes whose
exact exchange is full-range only (GDF Γ + multi-k, GPW/GAPW,
COSX) fail closed on any range-separated functional instead of
silently running HSE06 as PBE0 (the pre-2026-07-12 behaviour, on every
route). Long-range-corrected RSH (ωB97X, CAM-B3LYP, LC-ωPBE) fail
closed everywhere periodically: their K_full arm needs an exxdiv
treatment that is not validated. The experimental RSGAPW entry points
above are unchanged by this and remain the GAPW-side option.
The full-range (c_full) arm on a multi-k mesh uses the corrected
Ewald split. On a finite k mesh the SCF density is
Born-von-Kármán-torus periodic, so D(g) does not decay with image
distance and a bare 1/r image sum does not converge: it drifts
without limit as the lattice cutoff grows. The multi-k EWALD_3D drivers
(RHF, RKS, UKS) therefore build that arm as erfc(α r)/r in real space
plus a reciprocal channel per momentum transfer q = k − k' plus the
probe-charge q + G = 0 term: the exxdiv='ewald' convention, shared
with BIPOLE and implemented once in
vibeqc.periodic_corrected_exchange. Consequences worth knowing:
A hybrid or HF multi-k job no longer matches the Γ-only drivers bit-for-bit. Those keep their own truncated gauge, which is legitimate at Γ where the molecular-limit density does decay. Pure functionals build no full-range arm and are unaffected, as are screened hybrids (
c_full = 0).Multi-k RHF at a
(1,1,1)mesh keeps its molecular-limit branch (it zeroes every image block first, so its sum has one term) and stays in bit-parity with the Γ driver.A symmetry-reduced (IBZ) Monkhorst-Pack mesh works, wedge-native: the SCF diagonalises only at the irreducible points and unfolds the density to the full Brillouin zone per iteration with the Pisani/Dovesi star transport (
D(Vk) = W D(k) W^Hplus time reversal). This covers 3D full-range and screened hybrids and 2D slab screened hybrids, including oblique lattices. The exchange quadrature is exact. K-dependent diagonalisation and Bloch work shrink with the wedge; 3D exchange can also use orbit-reduced real-space builds. Slabs retain the raw finite-cutoff exchange operator used by their full mesh, so their dominant real-space exchange build does not shrink by the star multiplicity; only the density is reconstructed. Caveat: at loose lattice cutoffs the truncated operators themselves break the point symmetry, so wedge and full-mesh answers can still differ by the truncation asymmetry; both coincide once the sums are fold-converged (the defaultauto_optimize_truncationregime). An explicit k list carries no star metadata: a full-range arm fails closed, while a screened-only arm treats its supplied weights as the user’s quadrature and makes no symmetry-unfolding claim.2D slab and
dim != 3cells cannot use the corrected full-range split (the reciprocal q-channel cache is 3D-only). Full-range behavior is route-specific: RKS fails closed, legacy RHF/UKS paths warn and remain provisional, and long-range-corrected functionals are rejected by the periodic exchange resolver. HSE-type screened hybrids havec_full = 0, need no reciprocal q channel, and are supported by the direct erfc exchange route, including the 2D IBZ unfolding above.
The rest of this page is the side-by-side treatment of the three families that carry most day-to-day work: BIPOLE, GDF, and the GPW / GAPW plane-wave route, with RIJCOSX and RSGAPW noted alongside.
Validating a periodic route? Each JK route is its own implementation (never an external QC program at runtime). GDF and GPW/GAPW have same-family out-of-process references in PySCF and CP2K/GPAW. CRYSTAL is a component and convergence reference for BIPOLE, but the supported vibe-qc exact Ewald-J route does not execute CRYSTAL’s quartet replacement. The periodic JK routes & parity policy page is the map of which reference belongs to which route (and why cross-family comparison is a trap). It is the periodic backbone reference for the method paper.
2. BIPOLE: an Ewald J-split¶
2.1 Theory¶
BIPOLE is vibe-qc’s own direct-space Gaussian periodic SCF route. CRYSTAL famously splits the Fock build into two halves that live in the same electrostatic gauge:
The one-electron Coulomb \(V_{ne}\) and the nuclear-nuclear energy \(E_{nn}\) are evaluated with 3D Ewald. The same Ewald parameter \(\omega\) is shared by both (a single shared Ewald state). Direct truncation diverges on charged-nucleus crystals because the point-charge / Gaussian-pair interaction on the nucleus side does not decay.
The two-electron Fock matrix \(F^{2e} = J - \tfrac{1}{2}K\) is assembled in CRYSTAL by direct BIPOLE screening and multipole far-pair replacement. The supported vibe-qc route instead uses an exact Ewald-3D J-split in the same electrostatic gauge,
\[ J(\omega) = J^{SR}(\omega) + J^{LR}(\omega) + V_{bg}\cdot S, \qquad V_{bg} = -\frac{\pi N_e}{\omega^2 V}, \]where \(\omega\) is the same Ewald parameter used by \(V_{ne}\) and \(E_{nn}\). \(J^{SR}\) uses erfc-screened real-space ERIs; \(J^{LR}\) is built from a small reciprocal-space sum over AO-pair Fourier transforms; the uniform background restores charge neutrality. Exchange \(K\) is assembled fully in direct space via shell-pair Schwarz screening (the same machinery that the molecular four-index path uses).
The periodic quartet expansion is given in Chapter II.4c of Pisani, Dovesi, and Roetti (1988), where Eq. II.4.10 retains the common lattice-translation sum. Saunders et al. (1992) develops the related Gaussian-density electrostatic potential, shell-penetration, and spheropole treatment; it does not derive vibe-qc’s quartet dispatcher. Dovesi et al. (2014) and Erba et al. (2023) provide modern CRYSTAL context for the EXT EL-POLE / EXT EL-SPHEROPOLE conventions. The BIPOLE name in vibe-qc explicitly nods to that lineage.
2.2 What ships today¶
The BIPOLE driver is split across four method-flavour entry points
in pbc_bipole.py
and friends:
from vibeqc.pbc_bipole import run_pbc_bipole_rhf
from vibeqc.pbc_bipole_uhf import run_pbc_bipole_uhf
from vibeqc.pbc_bipole_rks import run_pbc_bipole_rks
from vibeqc.pbc_bipole_uks import run_pbc_bipole_uks
All four support:
Full real-space one-electron pipeline at Ewald gauge: \(S(g)\), \(T(g)\), \(V_{ne}(g)\) at
opts.lattice_opts.cutoff_bohr, Bloch-summed to per-k \(S(k)\) and \(H_{core}(k)\), canonical orthogonalisation \(X(k)\).The shared-gauge Ewald J-split two-electron build by default on 3D systems (
use_ewald_j_split=None->True): short-range \(J\) from direct erfc-screened ERIs, long-range \(J\) from reciprocal AO-pair Fourier transforms, matching electron background potential, full direct-space exchange.SCF inner loop with Bloch-sum -> direct real-space energy evaluation (\(\sum_g D(g) M(g)\)) -> optional multi-k Pulay DIIS -> optional level-shift -> diagonalisation -> optional MOM occupied-subspace reorder -> density rebuild.
Multi-k acceleration in the dense-k regime. Symmetry-reduced Monkhorst-Pack inputs are accepted and internally expanded back to the full mesh until true IBZ orbit expansion lands.
Parameter-free
bz_integration="gilat"occupations on the public RKS, UHF, and UKS routes. UHF/UKS integrate the fixed alpha and beta populations independently with single-spin degeneracy and zero entropy. This is a supported self-consistent path for gapped systems; metallic calculations use smearing for SCF and Gilat post-SCF because the sharp T = 0 occupation map is discontinuous at band crossings. RHF/ROHF/ROKS remain gated here.Production finite-difference atomic forces for all four flavours and fixed-cell atomic relaxation. Variable-cell and coupled atom/cell optimization fail closed;
compute_stress_tensoris only a force-virial diagnostic. Seebipole.mdfor the gradient and optimisation surface.
Dense-k STO-3G sign-off vs CRYSTAL14 at cutoff = 14 bohr:
Demo |
vibe-qc \(E_{\text{total}}\) (Ha / cell) |
\(\Delta\) vs CRYSTAL14 |
|---|---|---|
MgO SHRINK 8 |
\(-271.2177748509\) |
\(+0.369\;\text{mHa}\) |
Diamond SHRINK 8 |
\(-74.8771393842\) |
\(-0.145\;\text{mHa}\) |
Silicon SHRINK 8 |
\(-571.3214715798\) |
\(-0.659\;\text{mHa}\) |
The 15-system CRYSTAL parity demo suite lives at
tests/demos/
and the matching CRYSTAL14 reference inputs ship beside the
vibe-qc inputs.
2.3 Advantages¶
Multi-k production today, including multi-k hybrids. Multi-k SCF on UHF / UKS as well as RHF / RKS, and the route that carries exact-exchange K at \(\mathbf{k}\neq 0\) for hybrid functionals. (Open-shell GDF also runs multi-k UHF / UKS via
run_kuhf_periodic_gdf/run_kuks_periodic_gdf; In 3D, BIPOLE remains the AUTO open-shell default and the multi-k hybrid route; 1D AUTO uses GDF and 2D AUTO uses the slab route.)Global and screened hybrid DFT work on the supported envelope. Global hybrids and the validated HSE screened-exchange branch share BIPOLE’s direct-K machinery. Long-range-corrected range-separated hybrids fail closed, as do VV10/nonlocal-correlation and double-hybrid functionals whose additional energy terms are absent from the BIPOLE driver.
Production FD forces and fixed-cell optimisation. Atom optimisation runs in fractional coordinates. Variable-cell optimisation fails closed pending a certified stress and coupled convergence implementation.
External convergence reference. Matched basis and k-mesh calculations provide useful component and convergence checks, but the supported exact Ewald-J route is not the same truncation algorithm as a bipolar-expansion calculation and no universal per-mHa cross-code guarantee is claimed.
Diagnostic decomposition. Each iteration logs \(E_{kinetic}\), \(E_{nuclear\_attract}\), \(E_{J^{SR}}\), \(E_{J^{LR}}\), \(E_{exchange}\), \(E_{nn}\) separately so a parity mismatch can be localised to a single Coulomb contribution.
2.4 Disadvantages¶
3D only through the public BIPOLE route. A
dim=1wire routes to GDF under AUTO, and adim=2slab routes toSLAB_EWALD_2D. An explicit publicjk_method="bipole"request rejects both dimensions before setup. The low-dimensional direct-only BIPOLE branch is a direct-API diagnostic.Cost scales with the real-space cutoff. Direct \(K\) at large cutoff is the dominant per-iteration cost. Corrected-gauge direct RHF/RKS/UHF/UKS runs therefore stop before the first Fock build when the cheap overlap-fold preflight is in the critically truncated
drift > 1e-2regime; increasebipole_cutoff_bohruntil the drift is below1e-4for quantitative work. If that converged cutoff is too expensive, use a supported GDF or GPW route. The experimental multipole-far-pair branch is a retired research artifact, not a supported shortcut for this cost.No true IBZ acceleration yet. Symmetry-reduced Monkhorst- Pack inputs are accepted, but they are internally expanded to the full mesh before the Ewald-J build, so the cost is the same as a full-mesh run.
2.5 When to use BIPOLE¶
You need an open-shell (UHF / UKS) periodic SCF.
You need production FD forces or fixed-cell atom optimisation.
You are doing CRYSTAL parity work.
You need multi-k DFT today, including hybrid DFT, on dense meshes (2x2x2 through ~8x8x8) and modest basis sizes (STO-3G through pob-TZVP / def2-SVP class).
2.6 Quick start¶
import numpy as np
import vibeqc as vq
from vibeqc.pbc_bipole import run_pbc_bipole_rhf
ANG2BOHR = 1.0 / 0.529177210903
a = 4.21 * ANG2BOHR
lattice = (a / 2.0) * np.array(
[[0.0, 1.0, 1.0],
[1.0, 0.0, 1.0],
[1.0, 1.0, 0.0]]
)
sysp = vq.PeriodicSystem(
3, lattice,
[vq.Atom(12, [0.0, 0.0, 0.0]),
vq.Atom(8, [a / 2.0, a / 2.0, a / 2.0])],
)
basis = vq.BasisSet(sysp.unit_cell_molecule(), "sto-3g")
kmesh = vq.monkhorst_pack(sysp, [2, 2, 2], use_symmetry=False)
opts = vq.PeriodicRHFOptions()
opts.lattice_opts.cutoff_bohr = 14.0
opts.lattice_opts.nuclear_cutoff_bohr = 14.0
opts.initial_guess = vq.InitialGuess.SAD
opts.use_diis = True
opts.max_iter = 30
result = run_pbc_bipole_rhf(
sysp, basis, kmesh, opts,
use_ewald_j_split=True,
ewald_precision=1e-8,
)
print(f"E_total = {result.energy:+.6f} Ha")
End-to-end MgO RKS / PBE input lives at
examples/periodic/input-bipole-mgo-rks-pbe.py,
open-shell Li UHF at
examples/periodic/input-bipole-li-uhf.py,
and the unified-runner workflow at
examples/periodic/input-bipole-workflow-mgo.py.
2.7 Citations¶
C. Pisani, R. Dovesi, C. Roetti, Hartree-Fock Ab Initio Treatment of Crystalline Systems, Lecture Notes in Chemistry 48, Springer, 1988. DOI 10.1007/978-3-642-93385-1. Chapter II.4c gives the periodic quartet bipolar expansion.
V. R. Saunders, C. Freyria-Fava, R. Dovesi, L. Salasco, C. Roetti, “On the electrostatic potential in crystalline systems where the charge density is expanded in Gaussian functions,” Molecular Physics 77, 629 (1992). DOI 10.1080/00268979200102671. Source for the related shell-penetration and spheropole construction.
R. Dovesi, V. R. Saunders, C. Roetti, R. Orlando, C. M. Zicovich-Wilson, F. Pascale, B. Civalleri, K. Doll, N. M. Harrison, I. J. Bush, P. D’Arco, M. Llunell, M. Causa, Y. Noel, “CRYSTAL14: A program for the ab initio investigation of crystalline solids”, Int. J. Quantum Chem. 114, 1287 (2014). DOI 10.1002/qua.24658.
A. Erba et al., “CRYSTAL23: a program for computational solid state physics and chemistry”, J. Chem. Theory Comput. 19, 6891 (2023). DOI 10.1021/acs.jctc.2c00958.
3. GDF: native Gaussian density fitting¶
3.1 Theory¶
Gaussian density fitting (Whitten 1973; Dunlap 1979; Eichkorn et al. 1995; Vahtras, Almlof, Feyereisen 1993) projects the AO pair density onto a finite auxiliary basis \(\{\chi_P\}\):
The fit coefficients minimise the Coulomb error and require only the two-centre auxiliary metric \(M_{PQ} = (P|Q)\) and the three-centre integral \((\mu\nu|P)\). The factorisation
reduces the four-centre ERI to a single tensor, and the closed-shell Fock pieces collapse to
This is the standard molecular RIJK kernel that vibe-qc’s
DFJKBuilder implements; the periodic version requires three
extra ingredients on top:
Periodic auxiliary metric \(M^{per}_{PQ} = \sum_T (P_0 | Q_T)\). Naively, the 3D lattice sum of \(1/r\) across a charge-neutral set of aux primitives is conditionally convergent. The fix is PySCF-style modrho charge compensation: each contracted aux shell is renormalised so its monopole equals \(\sqrt{1/(4\pi)}\), and the AO-pair side is charge-balanced by smooth compensating Gaussians. The compensated integral converges in real space; the missing \((\text{aux}|\text{comp})\) piece is added back analytically in reciprocal space.
Periodic three-centre tensor \(T^{per}_{\mu\nu,P} = \sum_T (\mu_0 \nu_0 | P_T)\). Implemented as a libint lattice sum with Schwarz screening, mirroring the molecular
compute_3c_erilayout. For each k-point the Bloch-summed \(T^{per}_{\mu\nu,P}(\mathbf{k})\) is the same contraction.Cholesky factor \(L^{per}_{P,\mu\nu} = \sum_Q (\mu_0\nu_0|Q)\,(M^{per})^{-1/2}_{QP}\), computed once per SCF.
vibe-qc’s native GDF stack lives in
pbc_gdf.py,
periodic_rhf_gdf.py,
periodic_gdf_blocks.py,
and periodic_k_gdf.py.
The full design walkthrough, including the modrho compensation
empirical record, is in
design_native_gdf.md.
3.2 What ships today¶
Native GDF in vibe-qc covers:
Gamma-only RHF, RKS, and hybrids in 1D / 3D (a
dim=2slab raises) viarun_rhf_periodic_gamma_gdf(and the runner-levelrun_periodic_job(..., jk_method="gdf")).Multi-k RHF / RKS in 1D / 3D (a
dim=2slab raises) viarun_krhf_periodic_gdf(..., kmesh, ...)andrun_krks_periodic_gdf(..., kmesh, ...). A(1, 1, 1)mesh delegates to the Gamma-GDF path; any other Monkhorst-Pack mesh runs the full multi-k loop with k-dependent 3c / 2c blocks, Bloch-phase assembly, and multi-k DIIS. The multi-k Ewald-gauge fix brings a multi-k mesh to within 0.000 mHa of the Gamma energy in the molecular limit. On the 3D true-multi-k RKS route with a pure functional anduse_compcell=False, the analytic-FT Ewald Hartree J cache is retained only when it fits the bounded dense-cache target. Larger cases contract J directly from \(D(\mathbf{k})\) in bounded reciprocal-vector and output-cell batches, then Bloch-fold it; they do not retain the former(n_cells, n_AO, n_AO, n_G)complex tensor. Small jobs keep their pre-SCF cache reuse. TheG = 0omission, Ewald gauge,VIBEQC_J_EWALD3D_KEcutoff, and SCF defaults are unchanged. Gamma, HF/hybrid cached-Lpq,use_compcell=True, lower-dimensional, and diagnostic grid-backend routes do not use this new contraction.Translation-resolved DF block accessors via
compute_2c_eri_lattice_blocksandcompute_3c_eri_lattice_blocks, plus the Bloch-sum helpersbloch_sum_2c_eri_blocks/bloch_sum_3c_eri_blocksand the fit helperbuild_lpq_bloch_native. Summing blocks reproduces the Gamma metric exactly.Native gauge sharing. \(V_{ne}\) and \(E_{nn}\) are forced to Ewald-3D on 3D systems regardless of the user’s J/K route choice so the total energy is gauge-consistent (the
_gauge_lat_opts_for_v_ne_and_e_nuchelper inperiodic_rhf_gdf.py).Fermi-Dirac smearing at the Gamma point and on multi-k meshes via
opts.smearing_temperature(\(k_B T\) in Hartree).
The driver picks one of two backends per call and records it on
the PeriodicRHFGDFResult.backend field:
"native-gamma-gdf": true density fitting viaLpq. Used for 1D wires and 3D molecular-limit cells whose GDF cutoff includes only the home cell."ewald-jk-fallback": Ewald-3D \(J\) + real-space \(K\). Used for 3D systems with image cells inside the GDF cutoff. Seevibeqc.pbc_gdffor the compensated-cell GDF path that will eventually subsume this branch.
3.2.1 RSGDF all-FT-Bloch path, chemical-accuracy milestone (v0.9)¶
For tight ionic 3D crystals (LiH, MgO and similar), the
compensated-cell path in vibeqc.pbc_gdf now runs an
all-FT-Bloch route in its gdf_method="rsgdf" mode: the
3c tensor is assembled on a dense FFT mesh from Bloch-summed
AO pair-FTs, rather than the older sparse-mesh SR + LR split
that conflated single-orbital lattice sums (libint short
range) with molecular pair-FT long range. The unified all-FT
mesh handles both the vacuum-box limit and the tight ionic
limit with the same algorithm.
What landed across commit chain 018784c0..d7f4b3bd brings
the PBC GDF route to within chemical accuracy on LiH:
System |
Pre-session |
Post-session |
|---|---|---|
H₂ / 12-bohr / def2-svp-jk |
0.6 mHa |
0.04 µHa @ ke=400 |
LiH primitive FCC / sto-3g / def2-svp-jk |
+11 Ha (broken) |
−2.3 mHa @ ke=200 |
The three contributing fixes:
All-FT-Bloch path (
018784c0), dense FFT mesh + Bloch-summed pair-FT for the 3c side, replacing the sparse SR+LR split inside thersgdfroute.modrho-direct fix (
c949d748),build_lpq_native_fftnow takes the modrho aux basis directly, so the per-L1/√(4π/(2L+1))factor baked into the modrho coefficients is not double-applied. Pre-fix Lpq was 330× too large on LiH.Proper Ewald-Madelung (
d7f4b3bd), replaced the cubic Wigner shortcutα_M / L(exact only for cubic Bravais cells, 1.77 % off for primitive FCC) with a proper Ewald self-energy sum over real-space images + reciprocal G-vectors. Bit-exact to PySCF’spbc.tools.madelungon cubic, FCC, and intermediate cells. Seeewald.mdfor the user- facing surface andpython/vibeqc/madelung.pyfor the implementation.
The remaining −2.3 mHa LiH residue is not a GDF bug,
it is located in the V_ne (nuclear-electron) one-electron
Hcore: compute_nuclear_lattice_ewald builds V_long via grid
quadrature whose Becke partitioning breaks the (1,1,1)
3-fold rotational symmetry of the FCC primitive cell
(Li 2p_x ≠ 2p_y ≠ 2p_z by ~1.9 mHa per AO). A prototype
analytic FT replacement preserves the symmetry to machine
precision; productionising it is the periodic-1e chat’s job,
not GDF. See
HANDOVER_GDF_V0_11_2026_05_29.md
§ 2026-05-29 for the diagnostic chain.
3.2.2 Cauchy-Schwarz screening of the three-centre fit¶
The multi-k drivers accept fit_screen_threshold (default 0.0 = off,
exact) on the gdf_method="rsgdf" path:
r = vq.run_krhf_periodic_gdf(
system, basis, (2, 2, 2),
fit_screen_threshold=1e-10,
)
AO pairs \(\mu\nu\) whose Schwarz bound
\(\max_P \sqrt{(P|P)}\,\sqrt{(\mu\nu|\mu\nu)}\) on the fit mesh stays
below the threshold are dropped from every per-\((k_i,k_j)\) three-centre
fit tensor (Neese, Wennmohs, Hansen and Becker, Chem. Phys. 356,
98 (2009), § 3.1: the RI analogue of Häser-Ahlrichs direct-SCF
screening). The pair-norm factor is an analytic upper bound, so the
screen never underestimates a pair; 1e-10-class thresholds reproduce
the unscreened energy to well below SCF accuracy. The kept/dropped
pair counts are reported in the SCF log (no silent truncation). The
CCM RI routes (run_ccm_rhf_gdf / run_ccm_rks_gdf) forward driver
kwargs, so they inherit the option unchanged. Screened fits compose
with compute_gradient=True (Γ and multi-k, since 2026-07-30): the
analytic gradient differentiates the screened objective at the SCF’s
fixed pair mask. Non-rsgdf fit methods
raise NotImplementedError rather than silently ignoring the
threshold.
The Γ-point drivers (run_pbc_gdf_rhf / run_pbc_gdf_uhf /
run_pbc_gdf_uks, and the Γ (1,1,1) fast path of the multi-k
drivers) accept the same option. There it additionally selects the
memory-lean build: the fit sweeps its reciprocal mesh in G-chunks
and the Ewald-3D \(V_{ne}\) Fourier transform streams its own chunked
AO-pair FT, so the dense \((n_{\mathrm{AO}}, n_{\mathrm{AO}}, n_G)\)
pair-FT tensor (the dominant memory of a Γ-point GDF build on
production-basis cells) is never materialised (at the cost of running
the pair FT once per consumer instead of once shared). Γ k-meshes that
fall back to the legacy molecular-limit GDF driver (open options such
as level_shift / fock_mixing / smearing) raise
NotImplementedError rather than silently dropping the threshold.
Since 2026-07-16 only an explicit fock_mixing / fmixing_percent
/ level_shift request sends a default-Γ closed-shell RHF job to that
legacy fallback. The convergence="auto" profile knobs (e.g. the
ionic-insulator FMIXING 30% that MgO-class cells resolve) are
capability-filtered to zero instead: the run stays on the
PySCF-parity run_pbc_gdf_rhf driver, whose DIIS/accelerator stack
and auto-sized high-|G| tail carry the convergence, because the
legacy fallback’s dense-core absolute energies are parity-held
(G-GDF-001 in handovers/HANDOVER_GATED_ITEMS.md). The strategy
block in the .out states the filtered knob and the reason.
3.2.3 Space-group reduction of the exchange build¶
Exact exchange is the one \(n_k^2\) term in a multi-k GDF SCF: \(K(k_i)\) needs a sum over the whole Brillouin zone for every bra \(k_i\). The space-group saving is therefore on the bra index alone: build \(K(k_i)\) only at the irreducible-wedge representatives and symmetry-transport it across each star. Reducing the ket sum as well is not the same operation and is wrong (measured \(+1.389\) Ha on MgO).
Request it from the production entry point with symmetry_reduce_k:
r = vq.run_periodic_job(
system, basis,
method="RHF",
jk_method="gdf",
kpoints=(4, 4, 4),
symmetry="attach", # the wedge needs a symmetry model
symmetry_reduce_k=True,
aux_basis="def2-svp-jk",
output="nacl_reduced",
)
The Lpq cderi cache then holds \(n_{\mathrm{IBZ}} \times n_k\) blocks
instead of \(n_k^2\), and the memory preflight is charged at that
reduced count. Measured 2026-08-14 on NaCl primitive / def2-SVP with
aux_basis="def2-svp-jk" (33 AOs, 240 aux) at \((4,4,4)\),
\(n_{\mathrm{IBZ}} = 8\) of 64: the Lpq term drops from 15.95 GB to
1.99 GB (8x) and the total preflight from 25.08 GB to 4.14 GB (the
AO-pair FT bundle and the per-\(k\) buffers do not reduce). The .out
states the reduction explicitly
(symmetry_reduce_k = exchange bras 64 -> 8 (irreducible wedge))
directly above the [memory] block, so the estimate can be accounted
for.
Everything else is untouched (diagonalisation at every \(k\),
occupations, the energy expression, and the result shape), so the
reduction is exact, not an approximation, and bands / DOS / COOP /
QVF consumers see no change. Accuracy is limited only by the cell
list the transport rides on: on LiH FCC \((2,2,2)\) the \(K\) transport
residual is \(1.5\times10^{-3}\) at cutoff_bohr = 15,
\(8.2\times10^{-6}\) at 20 and \(1.1\times10^{-8}\) at 26, and the driver
warns below 20 bohr rather than degrading quietly.
Every precondition fails closed rather than silently running full-BZ, because a performance flag that looks effective and is not is worse than a refusal:
jk_method="gdf",dim=3, a true multi-k Monkhorst-Pack mesh, andmethodin RHF / RKS / UHF / UKS (spin-restricted open-shell GDF has no wedge surface);an attached symmetry model: pass
symmetry="attach", or attach validated operations to thePeriodicSystemyourself;a symmorphic space group. A glide or screw carries a fractional translation \(\tau\), contributing an \(e^{-i k\cdot\tau}\) factor the per-atom lattice-shift Bloch transport does not build, so the refusal names the group (rocksalt \(Fm\bar{3}m\) works; diamond \(Fd\bar{3}m\) is rejected up front);
exact exchange, because on a pure functional there is no \(n_k^2\) term to reduce;
no geometry optimization: the wedge-native SCF converges the k-transported exchange, whose gradient is not the captured single-point objective.
The underlying driver keyword is ibz_native=True on
run_krhf_periodic_gdf / run_krks_periodic_gdf /
run_kuhf_periodic_gdf / run_kuks_periodic_gdf, for callers driving
the drivers directly.
3.3 Advantages¶
Best closed-shell scaling. With aux size \(M \approx 3N\), per-iteration cost is \(\mathcal{O}(N^2 M) = \mathcal{O}(N^3)\), compared to \(\mathcal{O}(N^4)\) for the direct-K piece in BIPOLE.
Production multi-k for closed-shell RHF / RKS in 1D and 3D, plus a verified closed-shell energy + analytic-gradient route in 2D. Slab GDF uses a separate signed truncated metric and rigorous
V_ne(k)/ nuclear gauge; it is not the old bulk builder with a normal-axis vacuum cell.jk_method="auto"still picks the directSLAB_EWALD_2Droute fordim=2; request"gdf"explicitly.Hybrid DFT included. Exact-exchange coefficients are contracted out of the same
Lpqfactor that builds \(J\).Same kernel as molecular RIJK. Auxiliary-basis selection, Cholesky robustness, and linear-dependence handling are all shared with the molecular
DFJKBuilder.Dimensionality clean in 1D. For a wire there is no 3D Madelung problem to invent gauge for; the compensated lattice sum converges in real space and the route is genuinely single-shot.
3.4 Disadvantages¶
AUTO routing is dimensional. In 3D, AUTO keeps BIPOLE as the UHF/UKS default and explicit
jk_method="gdf"opts into native open-shell GDF. In 1D, where the public BIPOLE route is unavailable, AUTO selects GDF for RHF/RKS/UHF/UKS. Native open-shell GDF ships at Gamma (run_pbc_gdf_uhf/run_pbc_gdf_uks, including per-spin Fermi-Dirac smearing) and multi-k (run_kuhf_periodic_gdf/run_kuks_periodic_gdf).The analytic periodic GDF gradient has route-specific envelopes. The original
compute_gdf_gradientimplementation covers 3D Gammagdf_method="compcell"for closed-shell RHF and RKS (run_pbc_gdf_rhf(functional=..., compute_gradient=True), milestone 2: general-\(a_x\) J/K machinery plus the lattice-summed XC Pulay primitive on the SCF’s own quadrature) and, since milestone 3b (2026-07-29), UHF (run_pbc_gdf_uhf(compute_gradient=True)), on both AFT settings: the 2c/3c AFT reciprocal-space corrections are differentiated analytically, so the productionapply_aft_correction=Truefit no longer needs to be disabled for forces. Its Ewald \(V_{ne}\) derivative is fully analytic, it reuses the SCF’s resolved 2c/3c cutoffs, and it differentiates the threshold-truncated fit eigenspace. The same milestone identified and fixed the long-standing flat \(3.4\times10^{-3}\) Ha/bohr FD residual (a truncated-direct-sum nuclear gradient paired with the Ewald-gauge \(E_{nn}\)): the end-to-end H2/ STO-3G FD regressions now hold every route (RHF, LDA/PBE/PBE0, and the UHF triplet) to \(10^{-6}\) Ha/bohr (observed \(\sim 10^{-8}\)). UKS followed as milestone 4 (run_pbc_gdf_uks(functional=..., compute_gradient=True)): the per-spin assembly takes the functional’s exact-exchange fraction and adds the spin-polarised XC Pulay; UKS(M=1) collapses onto the RKS gradient at machine precision and the triplet passes the same AFT-on FD gate. The production rsgdf fit gained the same full Gamma ladder as milestone 6 (gdf_method="rsgdf",compute_gradient=True, RHF/RKS/UHF/UKS): its reciprocal-space metric and 3c tensor carry atom positions only inexp(-iG.R)phases, so their weighted centre derivatives are exact, and the full-SCF FD sits at ~4e-9 even at the ke=200 production default. Since the open-shell drivers default to rsgdf,run_pbc_gdf_uhf/uks(compute_gradient=True)needs no extra knobs. Tailed dense-core rsgdf fits are differentiated too: the long-standing dense-core analytic-vs-FD mismatch (~2.5e-5 Ha/bohr on MgO) was an e_nuc real-space truncation artefact in the energy, fixed 2026-07-29 by switching the 3D GDF drivers to the converged Ewald nuclear term. Multi-k GDF gradients landed 2026-07-30 (G-PBC-002 Item 4):run_krhf_periodic_gdf/run_krks_periodic_gdf/run_kuhf_periodic_gdf/run_kuks_periodic_gdfacceptcompute_gradient=Trueand return the analytic nuclear gradient onresult.gradient, differentiating the shared-q rsgdf fit k-resolvedly (per-q metric/3c centre derivatives, DF-K over every momentum-transfer group, the exxdiv W-shift, and the XC Pulay on the SCF’s own inverse-Bloch folded density). Full-SCF FD gates on H2 (2,1,1) at h=2e-4: KRHF \(1.1\times10^{-8}\), KUHF triplet \(1.6\times10^{-8}\), KRKS LDA \(4.1\times10^{-10}\) / PBE0 \(1.5\times10^{-8}\) Ha/bohr, with the KUKS(M=1) collapse onto KRKS at \(2.8\times10^{-17}\). Supported multi-k envelope: 3D cells,gdf_method="rsgdf"on the cached-Lpq SCF (use_compcell=True; HF/hybrids promote automatically), Γ-centered uniform full-BZ meshes, gapped integer T = 0 Aufbau occupations, pure and global-hybrid functionals. A band-overlap T = 0 global-Aufbau ensemble is supported for energies but fails closed for analytic gradients until its sharp-Fermi response is validated. The ASEbackend="gdf"calculator routeskpts != (1,1,1)through these drivers (rsgdf only; the tuplekptsis Γ-centered there, unlike theewaldbackend’s shifted Monkhorst-Pack on even meshes). Schwarz-screened fits are differentiated too since 2026-07-30 (Γ and multi-k): the gradient cache re-derives the SCF’s per-q pair mask from the same mask builder and differentiates the screened objective at that FIXED mask (masked pairs are hard zeros of the fit, so their derivative is exactly zero; the mask itself is a discrete quantity with no derivative). Screened full-SCF FD gates: Γ H2 \(2.7\times10^{-9}\), KRHF (2,1,1) \(1.2\times10^{-8}\) Ha/bohr. Finite-temperature (Fermi-Dirac) smearing is differentiated too since 2026-07-30 (Γ open-shell + multi-k): the analytic gradient is \(dA/dR\) of the driver’s reported Mermin free energy \(A = E - T S\): by Mermin’s variational principle (Phys. Rev. 137, A1441 (1965)) the occupation- and \(\mu\)-response terms vanish at self-consistency, so the \(T = 0\) assemblers run on the fractional-occupation density and energy-weighted density (the standard smeared-force statement, Marzari & Vanderbilt, PRL 82, 3296 (1999)). Smeared full-SCF FD gates against the free energy: Γ UHF \(3.8\times10^{-10}\) (compcell) / \(1.9\times10^{-10}\) (rsgdf), KRHF (2,1,1) \(3.5\times10^{-10}\) Ha/bohr at genuinely fractional occupations (\(f \approx 1.86/0.15\)), plus a \(T \to 0\) consistency pin at \(\le 10^{-15}\). FD-differencingresult.energyinstead ofresult.free_energydisagrees by the \(T\,dS/dR\) term (~0.1 Ha/bohr on the gate fixture); the free energy is the force surface.bz_integration="smearing"is accepted (it is literally the same occupation path). Restriction: Fermi-Dirac only for now: the MP/MV generalized entropies are conjugate to their occupations, but their GDF force paths do not yet have dedicated full-SCF gates, and MP occupations can be negative while the present fractional-block assembly takes square roots. Fixed-geometry smeared GDF gradients remain available and differentiate the free energy. High-level smeared GDF optimization now fails closed: although the force is the matching \(dA/dR\), the optimization, trajectory, and QVF schemas do not yet distinguish the Mermin objective \(A\) from internal energy \(E\). Slab (dim=2) GDF gradients landed 2026-07-30 (G-PBC-002 § 6): on adim=2system,run_krhf_periodic_gdf/run_krks_periodic_gdfwithcompute_gradient=Trueassemble the analytic gradient of the slab route’s two-gauge composition: the bare Parry / de Leeuw-Perram 2D-Ewald nuclear term, the slab \(V_{ne}\) derivative (z-resolved reciprocal blocks included), the S/T lattice folds, the signed Sundararaman-Arias truncated-metric DF-J/K fit derivative (the indefinite metric’s Fréchet response, finite negative \(K(0)\) zero mode and all), and the BvK probe-charge exxdiv overlap response, plus the periodic-Becke XC Pulay for RKS. Full-SCF FD on the compact H2 (2,2,1) slab fixture at h=2e-4: KRHF \(\le 2.2\times10^{-10}\) Ha/bohr per component (gate 1e-6, slab normal included; Γ (1,1,1) reduction \(2.1\times10^{-10}\)). KRKS is gated at \(2\times10^{-4}\): the XC term is exact at fixed grid (\(9\times10^{-12}\), asserted), and the full-SCF residual (PBE/PBE0 \(\sim 10^{-5}\) to \(8\times10^{-5}\) on that deliberately compact cell) is the moving periodic-Becke partition’sbecke_image_radius_bohrtruncation derivative; it falls to \(1.4\times10^{-6}\) at a 20-bohr image radius and is the same quadrature-limited class as the documented Γ KS gates.run_periodic_job(optimize=True, jk_method="gdf")on a slab relaxes on this objective through the same optimizer capture as the bulk routes;optimize_cellstays fail-closed (no slab GDF analytic stress). Slab open shell, smearing, custom meshes, and restarts remain fail-closed on the slab route itself; the ASE calculator still accepts only fully periodic (pbc=(True, True, True)) cells, so ASE slab forces remain closed at the boundary. Not yet differentiated (pinned pre-dry-run errors naming the reason): MDF/compcell multi-k fits, non-Fermi-Dirac smearing flavors,bz_integration="gilat", custom-weight k-point sets, pure-functional bulk multi-k RKS without the cached-Lpq fit, range-separated functionals,k_exchange="cosx", DFT+U, wire (dim=1) meshes. Optimizer wiring landed 2026-07-30:run_periodic_job(optimize=True)with a GDF-routed SCF (Γ and multi-k) relaxes on this GDF analytic-gradient objective – the exact driver call the SCF dispatched, re-run withcompute_gradient=Trueat each candidate geometry – rather than switching to the BIPOLE force surface, so the relaxed geometry is a stationary point of the energy the job reports. The.outoptimization block states the active force objective; unsupported gradient envelopes fail during runner preflight before dry-run/SCF, and periodic dispersion and positive-temperature requests fail before SCF because the optimizer does not add D3 per geometry and cannot yet label a Mermin free-energy objective distinctly;optimize_cell=Truefails closed on the GDF and BIPOLE routes because neither has a certified production stress and coupled cell optimizer. Periodic GDF KS also fails closed on VV10/nonlocal-correlation and double-hybrid functionals because those drivers do not add the nonlocal VV10 potential or the perturbative MP2 correlation term. Molecular RIJK has separate analytic-gradient coverage; seedensity_fitting.md.Gamma-only
gdf_method="compcell"cannot do tight ionic cells. On compact cells with Z > 1 atoms (e.g. rocksalt LiH primitive FCC, 115 bohr³) the Gamma-only compcell Hartree cannot resolve AO-pair overlap between periodic images and the SCF converges to a non-physical fixed point (LiH/STO-3G: +579.8 Ha at HF, +1172.6 Ha at UKS-PBE, vs PySCF’s -8.24 Ha). The drivers warn on entry and the energy-sanity guard rejects the converged garbage:run_pbc_gdf_uhf/run_pbc_gdf_uksraise aRuntimeError(bypass withcheck_energy_sanity=Falsefor diagnostics);run_pbc_gdf_rhfwarns and tags the result backend+SANITY_FAILED. Because of this, the open-shell Gamma drivers default togdf_method="rsgdf"since 2026-07-09 (on the broken LiH fixture the rsgdf defaults land at -8.33 Ha UHF / -8.23 Ha UKS-PBE, at the documented few-mHa diffuse-Li fitting floor from PySCF);compcellstays selectable for development and keeps the warning + guard. A KS run throughrun_pbc_gdf_ukswithoptions=Nonealso defaults toPeriodicKSOptionsnow, so the periodic-Becke-grid/torus-density XC pairing engages by default (the oldPeriodicRHFOptionsfallback silently evaluated XC in the v0.8.x molecular-grid convention: -7.9638 Ha on the same fixture).run_pbc_gdf_rhfkeeps itscompcelldefault (its warn-and-tag contract is pinned); use the multi-k route (validated at µHa parity on LiH FCC atkmesh=(2,2,2)) orgdf_method="rsgdf"at Gamma for such cells. Note the production runner already dispatches Gamma GDF jobs withgdf_method="rsgdf"; the compcell default only concerns direct API calls to the closed-shell driver.gdf_method="mdf"fails closed on compact dense-core cells. MDF’s real-space Hartree inherits the same Gamma-only tight-ionic compcell instability: measured on MgO primitive FCC/STO-3G (G-GDF-001 MDF sub-gate, 2026-07-29), Gamma MDF is non-convergent and trial-dependent atmdf_ke_cutoff=40/60(+1703/+2143/+418 Ha) and falsely reportsconverged=Trueatke=80at -1651 Ha (PySCF MDF: -271.0499 Ha); the multi-k(1,1,2)route lands -11741 Ha non-converged. All five GDF drivers raiseNotImplementedErroron this class (Z >= 8 in < 250 bohr³/atom) instead of returning the value behind a warning. Use the defaultgdf_method="rsgdf"there (the Gamma driver auto-sizes its high-|G| tail to PySCF parity; multi-k acceptsrsgdf_tail_ke_cutoff). MDF’s validated envelope is unaffected: the steep-core atom in a vacuum box, where it closes the all-electron floor at a modest mesh (Ne/STO-3G/10-bohr: 0.14 mHa vs PySCF MDF). Since the same closure, that class is no longer mis-tagged+PARITY_HELD(the tight-basis reciprocal-mesh hold is an rsgdf concept; MDF resolves the steep core in real space).Auxiliary basis coverage. Standard
def2-*-jkfitaux bases work cleanly.pob-tzvpdoes not yet have a matching aux: designing apob-tzvp-jkis a paper-worthy item on its own; the pragmatic workaround isdef2-tzvp-jk(aux size scales with orbital size, not orbital identity) or falling back to BIPOLE on pob-TZVP work.Aux conditioning is real. Diffuse aux primitives produce a near-singular metric; vibe-qc uses pivoted Cholesky with a
linear_dep_thrknob (default1e-9) and the modrho renormalisation, but you can still see warnings on very diffuse composite bases. Cut diffuse exponents withdrop_etaif needed.
3.5 When to use GDF¶
You are doing closed-shell RHF / RKS on a
dim=1wire, adim=3bulk crystal, or a closed-shelldim=2slab on a full Gamma-centered tuple mesh (energies and analytic forces).You want the cheapest production route on bulk for hybrid DFT and large basis (def2-SVP through def2-TZVP class).
You want an open-shell UHF / UKS single-point on the density-fitting metric (Gamma or multi-k). In 3D, pass
jk_method="gdf"explicitly because AUTO routes open-shell to BIPOLE; in 1D, AUTO already selects GDF.You want analytic forces on the periodic path: the GDF gradient ladder covers Gamma, multi-k, and closed-shell
dim=2slabs.
3.6 Quick start¶
import vibeqc as vq
# 2D graphene sheet, RKS / PBE, Gamma-only.
# AUTO resolves a dim=2 slab to the direct SLAB_EWALD_2D route. Select GDF
# explicitly only for the bounded closed-shell fitted energy route.
sysp = build_graphene() # dim=2 PeriodicSystem
basis = vq.BasisSet(sysp.unit_cell_molecule(), "def2-svp")
result = vq.run_periodic_job(
sysp, basis,
method="RKS", functional="pbe",
jk_method="gdf", # signed slab-truncated fit
kpoints=(2, 2, 1),
output="graphene-pbe",
)
print(f"E_total = {result.energy:+.6f} Ha / cell")
Multi-k closed-shell example:
import vibeqc as vq
from vibeqc import monkhorst_pack
from vibeqc.periodic_k_gdf import run_krhf_periodic_gdf
sysp = build_mgo()
basis = vq.BasisSet(sysp.unit_cell_molecule(), "def2-svp")
kmesh = monkhorst_pack(sysp, [4, 4, 4])
opts = vq.PeriodicRHFOptions()
opts.lattice_opts.cutoff_bohr = 12.0
opts.use_diis = True
result = run_krhf_periodic_gdf(sysp, basis, kmesh, opts,
aux_basis="def2-svp-jk")
print(f"E_total = {result.energy:+.6f} Ha k-mesh = 4x4x4")
The full runner-level workflow is at
examples/periodic/input-mgo-rocksalt-rhf.py
and the unified-runner variants under
examples/periodic/input-mgo-*.
3.7 Citations¶
J. L. Whitten, “Coulombic potential energy integrals and approximations”, J. Chem. Phys. 58, 4496 (1973).
B. I. Dunlap, J. W. D. Connolly, J. R. Sabin, “On some approximations in applications of X-alpha theory”, J. Chem. Phys. 71, 3396 (1979).
O. Vahtras, J. Almlof, M. W. Feyereisen, “Integral approximations for LCAO-SCF calculations”, Chem. Phys. Lett. 213, 514 (1993).
K. Eichkorn, O. Treutler, H. Ohm, M. Haser, R. Ahlrichs, “Auxiliary basis sets to approximate Coulomb potentials”, Chem. Phys. Lett. 240, 283 (1995).
F. Weigend, “Accurate Coulomb-fitting basis sets for H to Rn (def2-jkfit family)”, Phys. Chem. Chem. Phys. 8, 1057 (2006). DOI 10.1039/b515623h.
Q. Sun, T. C. Berkelbach, J. D. McClain, G. K.-L. Chan, “Gaussian and plane-wave mixed density fitting for periodic systems”, J. Chem. Phys. 147, 164119 (2017). The reference algorithm for the modrho-compensated periodic GDF that vibe-qc reproduces.
3.8 Periodic ROHF and ROKS: restricted open-shell SCF¶
For open-shell systems that need a single set of doubly-occupied spatial orbitals plus a defined set of singly-occupied orbitals (rather than the independent α / β orbitals of UHF), vibe-qc ships periodic restricted open-shell Hartree-Fock drivers on the Ewald-3D gauge and Gamma-point GPW. The Gamma-point GPW route also provides the corresponding spin-pure ROKS method with periodic XC:
import vibeqc as vq
from vibeqc import run_periodic_rohf_gpw, run_periodic_roks_gpw
from vibeqc.periodic_rohf_ewald import run_rohf_periodic_gamma_ewald3d
from vibeqc.periodic_rohf_multi_k_ewald import run_rohf_periodic_multi_k_ewald3d
run_rohf_periodic_gamma_ewald3d runs the Gamma-point ROHF SCF;
run_rohf_periodic_multi_k_ewald3d runs the multi-k variant over a
Monkhorst-Pack mesh. Both share the Ewald-3D one-electron gauge and J / K
build with the UHF Ewald path, so the total energy is gauge-consistent
with the other 3D routes.
run_periodic_rohf_gpw is the 3D Gamma-point HF alternative. It combines
the smooth-grid GPW Hartree J with per-spin exact K and the periodic Ewald
one-electron/nuclear gauge, then uses the shared Roothaan loop to produce one
restricted spatial-orbital set with integer closed/open/virtual occupations
of 2/1/0. The same maintained-preview route is available through
vq.run_periodic_job(system, basis, method="ROHF", jk_method="gpw").
The corrected-Ewald-exchange multi-k engine is also wired into the public
runner on the BIPOLE route:
vq.run_periodic_job(system, basis, method="ROHF", jk_method="bipole")
(the AUTO default when only method="ROHF" is given) runs
run_rohf_periodic_multi_k_ewald3d at Gamma (a (1,1,1) mesh) or on a
full Monkhorst-Pack mesh via kpoints=[n1, n2, n3], with the ordinary
.out / .system / QVF / citation output. The LiH+/STO-3G (3,1,1)
anchor of that engine is validated out of process against PySCF KROHF/GDF
to 0.062 mHa. BIPOLE-specific knobs the engine does not honour (MOM, ODA,
multipole far-field, ewald_omega overrides, sr_image_precision,
Fock mixing) fail closed rather than being silently ignored.
run_periodic_roks_gpw(..., functional="pbe") uses the same restricted
orbital and Roothaan contracts while adding the established spin-polarised
GPW XC potential and energy. It is also available through
vq.run_periodic_job(system, basis, method="ROKS", functional="pbe", jk_method="gpw"). LDA, GGA, meta-GGA, and global-hybrid functionals share
the Gamma GPW UKS envelope. Range-separated and direct double-hybrid ROKS are
not implemented on this backend.
ROKS also runs on the BIPOLE route, on the same corrected-Ewald-exchange
multi-k engine as ROHF above:
vq.run_periodic_job(system, basis, method="ROKS", functional="pbe", jk_method="bipole") reaches run_roks_periodic_multi_k_ewald3d at Gamma
(a (1,1,1) mesh) or on a full Monkhorst-Pack mesh via
kpoints=[n1, n2, n3]. Each per-spin Fock is
\(F_\sigma(k) = H_\mathrm{core}(k) + J(k) - c_\mathrm{full} K_\sigma(k) +
V_{xc}^\sigma(k)\), and the two are combined by the same Roothaan coupling
ROHF uses. Supported: LDA, GGA, meta-GGA and global hybrids. A pure
functional builds no exchange at all: neither the exchange caches nor the
\(O(n_k^2)\) long-range \(K\) loop, which is what makes dense meshes
affordable there. Screened hybrids (hse06 and friends) need an
erfc-attenuated exchange arm this engine does not carry and fail closed, as
do long-range-corrected functionals and double hybrids. The Li/PBE/STO-3G
(1,1,2) anchor agrees with an out-of-process PySCF KROKS().density_fit()
reference to 0.11 mHa, and the closed-shell PBE0 limit reproduces the
BIPOLE RKS route to 0.02 mHa.
Note
Like the ROHF route, this driver keeps the cell’s alpha and beta counts at
every k point. Its ROKS-specific occupation rule also detects when the one
open electron selects an exactly degenerate orbital set. It locks that set as
one restricted-open shell and shares the electron equally over its members;
for example, a twofold shell has occupations 0.5/0.5. This is the fixed,
zero-temperature ensemble for a symmetry-degenerate shell, not electronic
smearing. The Li/PBE/STO-3G 6-bohr-box (2,2,1) case now converges in 6
iterations instead of 87-200 cycles with an arbitrary integer SOMO.
General metallic filling, finite-temperature open-shell smearing, and multiple partially occupied open shells are not inferred by this path. Use a supported unrestricted route when the system needs those occupation models.
ROHF on the native GDF route. run_periodic_job(method="ROHF", jk_method="gdf") is the normal output-producing entry point;
run_krohf_periodic_gdf
(periodic_rohf_gdf.py) is the density-fitted alternative to the Ewald-3D
engine above. Gamma is the (1,1,1) mesh of the same code path, so there
is only one driver to reason about:
from vibeqc import run_periodic_job
result = run_periodic_job(
system, basis, method="ROHF", jk_method="gdf",
kpoints=(3, 1, 1), # omit for Gamma
aux_basis="def2-svp-jk", gdf_method="rsgdf",
)
result.energy, result.s_squared, result.mo_occupations[0]
It reuses the multi-k GDF machinery verbatim – the per-\((k_i, k_j)\)
cderi cache, Hartree \(J\) from the BZ-summed total density, the
exxdiv='ewald' BvK-supercell Madelung shift applied once per spin, and
the converged Ewald nuclear repulsion – and differs from
run_kuhf_periodic_gdf only in the orbital step, where the two spin
Focks are combined by Roothaan’s effective Fock. At multiplicity 1 it
reproduces run_krhf_periodic_gdf to machine precision; Li/STO-3G in a
10-bohr box at Gamma sits \(+2.86\times10^{-5}\) Ha from out-of-process
PySCF 2.13.1 KROHF/GDF, and that residual collapses to
\(+2.2\times10^{-7}\) Ha as the rsgdf mesh is refined – the shared
fit-truncation ladder, not a convention difference.
Exchange is the only \(O(n_k^2)\) term, so it is built by contracting the cderi cache against the occupied MO blocks rather than the \(n_\mathrm{bf}\times n_\mathrm{bf}\) densities: the same operator at \(n_\mathrm{occ}/n_\mathrm{bf}\) of the cost, as two GEMM calls per k-pair (so the work stays inside threaded BLAS). Since 2026-08-02 every multi-k GDF driver builds exchange that way, not just this one. The rsgdf cderi setup rides the existing MPI k-point farming described in § 6.
Note
That contraction is an exact reassociation, not an approximation, and it does not change what any run reports: converged energies move by at most \(2.5\times10^{-11}\) Ha, with identical iteration counts. It also does not speed up a small job noticeably, because on test-scale cells the exchange build is a negligible fraction of the wall time (the cderi build dominates); the saving is aimed at production meshes and realistic bases, where exchange is what dominates.
ROKS on GDF is a separate increment and is not implemented: a
functional raises rather than silently running something else. Smearing
and 2D slabs raise as well. Analytic gradients, COSX exchange and
symmetry-reduced (ibz_native) exchange are not part of this driver’s
argument surface at all, so there is no way to ask for them. The public route
adds .out, .system, Molden/QVF sidecars when applicable, and the ROHF plus
GDF references; it does not change the standalone driver’s energy or gauge.
For both methods, GAPW, 1D/2D cells, multi-k GPW, gradients,
restart densities, and electronic smearing fail closed. The standalone
drivers’
smearing_alpha argument controls nuclear-charge smoothing in the
one-electron potential, not electronic Fermi smearing.
ROHF avoids the spin contamination of UHF at the cost of the more involved coupling operator; reach for it when a clean \(\langle S^2\rangle\) matters more than variational freedom.
4. GPW and GAPW: the plane-wave / augmented route¶
4.1 Theory¶
The Gaussian + plane-wave (GPW) and Gaussian-augmented plane-wave (GAPW) methods, due to Lippert and Hutter and implemented as the core CP2K periodic-DFT engine, replace the four-centre Coulomb build with a Poisson solve on a uniform real-space grid:
Collocate the Gaussian-built electron density onto a uniform 3D grid sampled in fractional cell coordinates, \(\rho(\mathbf{r}) = \sum_{\mu\nu} D_{\mu\nu} \chi_\mu(\mathbf{r})\chi_\nu(\mathbf{r})\).
Solve Poisson in reciprocal space: \(V_H(\mathbf{G}) = 4\pi\,\rho(\mathbf{G})/|\mathbf{G}|^2\), with \(V_H(\mathbf{G}=0)\) pinned to zero. A neutral cell handles the long-range tail through this gauge; an unbalanced charge gets the standard uniform-background self-image shift, which is the same Madelung convention as the rest of vibe-qc.
Project back to the AO basis: \(J_{\mu\nu} = \int \chi_\mu(\mathbf{r}) \chi_\nu(\mathbf{r}) V_H(\mathbf{r})\,\mathrm{d}\mathbf{r} \approx \Delta V \sum_g \chi_\mu(\mathbf{r}_g) \chi_\nu(\mathbf{r}_g) V_H(\mathbf{r}_g)\).
The cost of the FFT is \(\mathcal{O}(N_g \log N_g)\) where \(N_g = N_x N_y N_z\) is set by the plane-wave cutoff \(|\mathbf{G}_{\max}|^2 = 2 E_{\text{cut}}\). For a smooth pseudo- density that is much cheaper than building the full four-centre ERI tensor.
The catch is that core densities are sharply peaked, and a grid fine enough to resolve them is enormous. The two responses to this are:
GPW: use a pseudopotential to remove the core electrons. The remaining valence pseudo-density is smooth and a moderate \(E_{\text{cut}}\) (tens to a few hundred Ry) suffices.
GAPW (Lippert and Hutter, 1999): keep the all-electron problem, but split the density into a smooth part \(\tilde\rho\) that lives on the coarse plane-wave grid plus per-atom hard / soft corrections \(\rho_a - \tilde\rho_a\) that live on a fine radial grid around each nucleus. The Hartree potential decomposes as
\[ V_H[\rho] = V_H[\tilde\rho] + \sum_a \Big( V_H[\rho_a] - V_H[\tilde\rho_a] \Big), \]where the smooth piece reuses the GPW Poisson solve and the atomic pieces are local 1D radial Poisson solves with no FFT. The augmentation restores all-electron accuracy without paying the cost of resolving the core on the smooth grid. The PAW generalisation (Blochl 1994) takes the same dual-grid idea further by transforming all-electron orbitals through a per-atom projector basis.
4.2 Status in vibe-qc¶
The GPW / GAPW track grew out of the v0.10.x acceleration program and now
drives a full periodic SCF. The design doc with the full milestone
history is at
design_periodic_gapw.md.
Both routes are reached with jk_method="gpw" or jk_method="gapw" on
run_periodic_job, and both emit a GAPWExperimentalWarning when you opt
in. GAPW RHF/UHF additionally requires
gapw_molecular_limit=True; without that explicit isolated-cell declaration
it fails closed because its promoted analytic one-centre correction is not a
dense-crystal image-summed functional. What runs today:
Gamma-point SCF for RHF, RKS, UHF, and UKS via
run_periodic_rhf_gpw/run_periodic_uhf_gpw/run_periodic_uks_gpw(GPW) andrun_periodic_rhf_gapw/run_periodic_uhf_gapw/run_periodic_uks_gapw(GAPW). RKS / UKS require afunctional=.Maintained-preview 3D Gamma-point ROHF and ROKS via
run_periodic_rohf_gpw/run_periodic_roks_gpw, or the correspondingrun_periodic_job(method="ROHF", jk_method="gpw")orrun_periodic_job(method="ROKS", functional=..., jk_method="gpw")route. Both use GPW J and the shared Roothaan loop with integer 2/1/0 occupations; ROHF adds per-spin exact K and ROKS adds spin-polarised XC plus functional-scaled K. They are not GAPW, multi-k, or electronic-smearing routes.Multi-k RKS (pure DFT) via
run_periodic_rks_gpw_multi_kandrun_periodic_rks_gapw_multi_k, including LDA/GGA and self-regularising meta-GGAs such as r2SCAN. Hybrid / HF multi-k is not yet wired on this route and raises.Forces, +U, Fermi-Dirac smearing, and D3(BJ) dispersion. GPW/GAPW cover RHF/RKS/UHF/UKS +U at Gamma and RKS +U at multi-k; multi-k open-shell +U is not wired. GPW retains the high-level finite-difference optimization and Hessian plumbing. GAPW RHF/UHF instead rejects high-level
optimize,optimize_cell, andhessianrequests so a follow-on workflow cannot silently change the analytic one-centre energy surface. Fixed-cell GAPW forces remain available throughVibeqcGAPW; block-mode DFT retains the existing derivative plumbing.
The milestone trail that landed this:
Milestone |
Status |
Deliverable |
|---|---|---|
M1 |
landed |
|
M2 |
landed |
GPW Hartree-J via FFT-Poisson + full Gamma-point SCF |
M3 |
landed |
GAPW dual-grid augmentation; multi-k RKS; open-shell UHF / UKS |
M4 |
in progress |
Metallic GAPW refinements with smearing |
M5 (stretch) |
scheduled |
ACE-decorated K for hybrids + on-demand PAW dataset fetcher |
The grid kernels live in
periodic_gapw_j.py
(GPW) and
periodic_gapw_augment.py
(GAPW augmentation), with the runner dispatch in periodic_runner.py. The
GpwJBuilder orchestrates density collocation -> FFT-Poisson ->
AO-basis projection into the Hartree-J matrix; the GAPW driver adds the
per-atom augmentation on top.
Note
GPW and GAPW carry an opt-in GAPWExperimentalWarning because the route is
younger than GDF / BIPOLE and its parity sweep against CP2K is still
broadening, not because it is unimplemented. For tight-cell hybrid work the
mature choice is still GDF or BIPOLE.
4.3 Advantages¶
Linear-log scaling Hartree-J. FFT-Poisson is \(\mathcal{O}(N_g \log N_g)\), independent of basis size. For large supercells with modest valence densities this is the decisive scaling win.
Natural fit for large cells. Slabs with hundreds of atoms and metallic systems where smearing matters benefit most.
GAPW gives all-electron accuracy without bundled pseudopotentials, by carrying the core augmentation on per-atom radial grids.
Pluggable exchange. GAPW replaces the J build only; exchange goes through whichever K-builder the existing periodic SCF would use. ACE decoration (Lin Lin 2016) is the planned hybrid-DFT accelerator and is being designed so it can be shared with the locality-exploitation track (ADMM, OT).
4.4 Disadvantages (intrinsic and current)¶
Younger than GDF / BIPOLE. The route runs a full SCF but its CP2K parity sweep is still broadening, so it carries the opt-in
GAPWExperimentalWarning. For a production tight-cell hybrid, prefer GDF or BIPOLE today.Multi-k is pure-DFT RKS only. Hybrid and HF multi-k are not yet wired on the GPW / GAPW route; multi-k hybrids stay on BIPOLE.
Plane-wave cutoff is an extra knob. Sensible defaults are derived from the tightest primitive exponent and a CP2K-style
REL_CUTOFFsafety factor (calibrated againstREL_CUTOFF = 60 Ry).Pseudopotential licensing is non-trivial. The v0.10.x design decision (see
design_periodic_gapw.mdsection 9) is to bundle no PAW dataset and instead build a vqfetch-style on-demand fetcher that filters out GPL / proprietary records. GBRV (CC-BY-SA), ABINIT-JTH (mixed), GPAW datasets (GPL), PSlibrary (mixed), and VASP POTCARs (proprietary) all fail the bundle test under MPL-2.0 (seedocs/license.mdfor the full inventory).3D-focused. The route is exercised mainly on 3D periodic cells; 2D slab and 1D wire coverage is thinner than on GDF, which remains the go-to for low-dimensional systems.
FFTW3 dependency is GPL-v2. The combined binary linking FFTW3 is effectively GPL-v2 (
CLAUDE.mdsection 1). A future FFT-backend abstraction (VIBEQC_FFT_BACKEND={fftw3, pocketfft, kissfft}) is on the roadmap to allow commercial-friendly binaries.
4.5 When to use GPW / GAPW¶
Reach for GPW / GAPW when you want plane-wave Hartree-J on a large smooth-density cell: large-cell periodic DFT (slabs and bulk supercells with hundreds of atoms) where the BIPOLE direct-K cost and the GDF aux-basis cost both become uncomfortable, and where the \(\mathcal{O}(N_g \log N_g)\) FFT-Poisson build pays off as \(N\) grows. GAPW adds all-electron accuracy without pseudopotential files. Both run a full \(\Gamma\)-point SCF (RHF / RKS / UHF / UKS) plus multi-k RKS today. For tight-cell hybrids and for production CRYSTAL parity, stay on GDF / BIPOLE until the GPW / GAPW parity sweep and hybrid multi-k land.
4.6 Citations¶
G. Lippert, J. Hutter, M. Parrinello, “A hybrid Gaussian and plane-wave density functional scheme”, Mol. Phys. 92, 477 (1997).
G. Lippert, J. Hutter, M. Parrinello, “The Gaussian and augmented-plane-wave density functional method for ab initio molecular dynamics simulations”, Theor. Chem. Acc. 103, 124 (1999). The GAPW formulation.
M. Krack, M. Parrinello, “All-electron ab initio molecular dynamics”, Phys. Chem. Chem. Phys. 2, 2105 (2000).
J. VandeVondele, M. Krack, F. Mohamed, M. Parrinello, T. Chassaing, J. Hutter, “Quickstep: fast and accurate density functional calculations using a mixed Gaussian and plane waves approach”, Comput. Phys. Commun. 167, 103 (2005). The CP2K Quickstep reference.
P. E. Blochl, “Projector augmented-wave method”, Phys. Rev. B 50, 17953 (1994). The PAW formulation that the M5 stretch goal targets.
L. Lin, “Adaptively compressed exchange operator”, J. Chem. Theory Comput. 12, 2242 (2016). The ACE acceleration of exact exchange that M5 wraps around GAPW for hybrid-DFT scaling.
4.7 RSGAPW: range-separated GAPW for screened hybrids¶
Range-separated hybrids (HSE06, ωB97X, ωB97M, CAM-B3LYP) split the Coulomb operator with the error function, \(1/r = \mathrm{erf}(\omega r)/r + \mathrm{erfc}(\omega r)/r\), and apply a different fraction of exact exchange to each piece. vibe-qc carries these on the plane-wave grid through a dedicated range-separated GAPW path:
from vibeqc.periodic_gapw_range_sep import (
run_periodic_rhf_rsgapw, # range-separated HF exchange
run_periodic_rks_rsgapw, # range-separated hybrid KS
)
The long-range (smooth) Coulomb piece is solved by FFT-Poisson on the
plane-wave grid; the short-range piece uses libint erfc-screened
integrals. The GAPW per-atom augmentation sees only the total (unscreened)
Coulomb potential, so the \(\omega\)-split applies to the smooth-grid J and
the K builders alone. omega_for_functional(name) returns the
\((\omega, \text{HF}_{SR}, \text{HF}_{LR})\) triple for the supported
functionals.
This is a dedicated entry point, not a jk_method route: you call
run_periodic_rhf_rsgapw / run_periodic_rks_rsgapw directly rather than
selecting it through run_periodic_job(jk_method=...). Citations: Heyd,
Scuseria, Ernzerhof, J. Chem. Phys. 118, 8207 (2003) (HSE); Chai and
Head-Gordon, J. Chem. Phys. 128, 084106 (2008) (ωB97X); Yanai, Tew,
Handy, Chem. Phys. Lett. 393, 51 (2004) (CAM-B3LYP).
4.8 RIJCOSX: density-fitted J with chain-of-spheres K¶
RIJCOSX pairs a GDF-fitted Coulomb build with a seminumerical
chain-of-spheres (COSX) exchange build on a periodic Becke grid. It is the
periodic analogue of the molecular RIJCOSX accelerator (Neese 2009) and is
selected with jk_method="rijcosx":
result = vq.run_periodic_job(sysp, basis, method="RHF",
jk_method="rijcosx")
What runs today:
Gamma RHF. The dedicated
run_periodic_rijcosx_rhfdriver keeps the original periodic RIJCOSX path for one-point closed-shell HF. Its two Gamma JK builders iterate on the smooth seminumerical exchange surface, then apply the analytic one-center replacement to the final Fock and orbitals after convergence. The reported energy remains on the iterated seminumerical surface, matching the molecular RIJCOSX contract.True multi-k RHF / RKS / UHF / UKS.
run_periodic_job(..., jk_method="rijcosx", kpoints=(...))uses the native multi-k GDF loop for RI-J and switches exact exchange to the composed periodic COSX backend (k_exchange="cosx"). Closed-shell density mixers, closed-shell READ restart, closed-shell +U, and closed-shellrsgdf_tail_ke_cutofffollow the same support envelope as the GDF multi-k route. After convergence the multi-k drivers apply the analytic one-center replacement to the returned Fock matrices and orbitals, evaluated with the same short-range kernel as the bridge’s real-space exchange; the reported energy remains on the iterated seminumerical surface, matching the molecular RIJCOSX and Gamma-builder contract.One-cell RKS on vacuum-padded cells.
run_periodic_job(..., method="RKS", jk_method="rijcosx", kpoints=(1, 1, 1))runs the Gamma RIJCOSX RKS driver when every active lattice length is at least 12 bohr and the cell is not tight: molecular DF J plus periodic COSX K through the dedicated Gamma builder, XC integrated on the molecular Becke grid (exact in that envelope), and the post-convergence one-center replacement applied to the returned Kohn-Sham matrix. Hybrids route their exact-exchange fraction through COSX; pure functionals never build K.One-cell UHF/UKS on vacuum-padded cells. The open-shell Gamma RIJCOSX drivers follow the same envelope rule as RKS: molecular DF J from the total density, per-spin periodic COSX K, per-spin post-convergence one-center replacement, and (UKS) XC on the molecular Becke grid. Spin counts follow the system multiplicity.
One-cell tight-cell RKS/UHF/UKS fail closed. Tight or short-axis cells need the periodic-density XC grid and the Gamma-folded exchange classes, so vibe-qc refuses to label those one-cell calculations as RIJCOSX.
When to use it: explore the periodic COSX approximation for HF and hybrid DFT on compact periodic cells, with GDF as the independent reference route. For pure functionals such as PBE, RIJCOSX and RI share the same zero-exact- exchange KS Fock build; use a hybrid such as PBE0 when you specifically want to exercise COSX exchange. Citation: F. Neese, F. Wennmohs, A. Hansen, U. Becker, “Efficient, approximate and parallel Hartree-Fock and hybrid DFT calculations. A ‘chain-of-spheres’ algorithm for the Hartree-Fock exchange”, Chem. Phys. 356, 98 (2009).
5. Side-by-side comparison¶
5.1 Dimensionality and capability matrix¶
1D wires |
2D slabs |
3D bulk |
RHF |
UHF |
RKS pure |
RKS hybrid |
UKS |
Multi-k |
Analytic gradient |
Cell opt |
|
|---|---|---|---|---|---|---|---|---|---|---|---|
SLAB_EWALD_2D |
no |
yes |
no |
yes |
no |
yes |
yes |
yes |
yes |
no |
no |
BIPOLE |
no (direct-API diagnostic only) |
raises |
yes |
yes |
yes |
yes |
yes |
yes |
yes |
preview |
no |
GDF (native) |
yes |
closed-shell |
yes |
yes |
yes (Γ + multi-k) |
yes |
yes |
yes (Γ + multi-k) |
yes |
yes (Γ / multi-k / closed-shell slab) |
no |
GPW |
limited |
raises |
yes |
yes (Γ) |
yes (Γ) |
yes (Γ) |
yes (Γ) |
yes (Γ) |
yes (RKS) |
FD |
no |
GAPW |
limited |
raises |
yes |
yes (Γ) |
yes (Γ) |
yes (Γ) |
yes (Γ) |
yes (Γ) |
yes (RKS) |
block only |
no |
RIJCOSX |
yes (multi-k) |
raises |
yes |
yes |
yes (multi-k) |
yes (multi-k) |
yes (multi-k) |
yes (multi-k) |
yes |
no |
no |
RSGAPW |
limited |
raises |
yes |
yes (Γ) |
no |
yes (Γ) |
yes (Γ, RS) |
no |
no |
FD |
FD |
ROHF / ROKS |
no |
no |
yes |
ROHF (Ewald; GDF Γ + multi-k; GPW Γ) |
n/a |
ROKS (Ewald; GPW Γ) |
ROKS (Ewald global hybrids; GPW Γ) |
no |
yes (ROHF + ROKS Ewald) |
no |
no |
Slabs have two routes. SLAB_EWALD_2D is what jk_method="auto"
selects for dim=2, and the explicit slab-GDF route is the closed-shell
alternative that also carries analytic gradients (optimize=True,
2026-07-30). Every bulk builder raises on dim=2 rather than returning
an a3-dependent energy. Fermi-Dirac smearing and open-shell HF still
need a dim=3 cell (vq.slab(..., periodic_z=True)); so do
freeze-mask relaxation and NEB, which run on the BIPOLE force stack.
The direct run_pbc_bipole_* APIs retain a 1D DIRECT_TRUNCATED
molecular-limit diagnostic. run_periodic_job does not expose it: explicit
BIPOLE rejects dim=1, and AUTO selects the maintained GDF wire route.
Notes on the matrix: GDF open-shell (UHF / UKS) ships at Gamma and multi-k.
In 3D, AUTO routes open shell to BIPOLE by design, so you opt into GDF with an
explicit jk_method="gdf"; in 1D, AUTO selects GDF. GPW / GAPW multi-k is
pure-DFT RKS only (hybrid / HF multi-k raise on that route). GPW forces and
fixed-cell gradients use the finite-difference path the runner shares; cell
optimization fails closed. GAPW direct
analytic gradients cover block mode, while high-level HF optimization and
Hessian requests fail closed; block-mode DFT retains its existing derivative
plumbing, but cell optimization also fails closed. VibeqcGAPW uses analytic block-mode forces or full-SCF finite
differences for the molecular-limit analytic mode.
RIJCOSX is Gamma RHF plus true multi-k RHF/RKS/UHF/UKS through the GDF/COSX
backend; one-cell RKS/UHF/UKS requests fail closed so they are not mislabeled.
RSGAPW (range-separated GAPW) remains a dedicated entry point. ROHF has
dedicated Ewald entry points, public and standalone native-GDF entry points
(run_periodic_job(method="ROHF", jk_method="gdf") and
run_krohf_periodic_gdf, Gamma + multi-k), and a public
jk_method="gpw" route at 3D Gamma
(the ROHF “RHF” column reads as restricted open-shell HF on the Ewald-3D
gauge at Gamma and multi-k, on the GDF route at Gamma and multi-k, plus
GPW at Gamma). RSGAPW handles screened
hybrids such as HSE06 / ωB97X / CAM-B3LYP.
5.2 Scaling and cost intuition¶
Per-iter J |
Per-iter K |
Memory |
Notes |
|
|---|---|---|---|---|
BIPOLE |
\(\mathcal{O}(N^2)\) per cell + reciprocal \(J^{LR}\) |
\(\mathcal{O}(N^4)\) direct with Schwarz |
\(\mathcal{O}(N^2)\) |
\(K\) dominates at large cutoff. The quartet multipole prototype is fail-closed and is not a supported shortcut. |
GDF |
\(\mathcal{O}(N^2 M)\) via \(L_{P,\mu\nu}\) on fitted branches; \(\mathcal{O}(N_k N^2 N_g N_c)\) batched AFT on the 3D pure-DFT Ewald-J fallback |
\(\mathcal{O}(N^2 M)\) via \(L_{P,\mu\nu}\); absent for pure DFT |
\(\mathcal{O}(N^2 M)\) for fitted \(L\); bounded FT batch plus \(\mathcal{O}(N_c N^2)\) J blocks on the pure-DFT fallback |
Aux size \(M \approx 3N\); the pure-DFT fallback never retains the all-cell/all-\(G\) FT tensor. |
GPW / GAPW |
\(\mathcal{O}(N_g \log N_g)\) FFT + \(\mathcal{O}(N N_g)\) collocation + projection |
inherits whichever K builder is composed with it (target: ACE) |
\(\mathcal{O}(N_g)\) for the grid |
\(N_g\) depends on the plane-wave cutoff, not on \(N\); the win shows up as \(N\) grows. |
N is the AO basis size per unit cell, M is the auxiliary
basis size, N_k is the number of k-points, N_g is the reciprocal
or plane-wave grid count, and N_c is the number of real-space lattice
cells.
5.3 Method-selection chart¶
Periodic SCF
|
+-- dim=2 slab
| +-- AUTO: SLAB_EWALD_2D (energies)
| +-- explicit closed-shell GDF (energies + forces)
|
+-- dim=1 wire
| +-- GDF for RHF/RKS/UHF/UKS
| +-- ROHF unavailable through AUTO
|
+-- dim=3
+-- UHF/UKS: AUTO selects BIPOLE
+-- closed shell: GDF by default
+-- BIPOLE for exact-route FD forces and fixed-cell optimization
+-- GPW/GAPW for large smooth-density systems
The slab branch comes first because it is exclusive: no bulk builder
accepts dim=2. Explicit closed-shell slab GDF supplies analytic forces.
For smearing, open shell, freeze masks, or periodic Gaussian NEB, build the
cell as dim=3 with vq.slab(..., periodic_z=True) instead. These are
separate capability envelopes: finite-temperature BIPOLE single points are
supported, but BIPOLE atom optimization and periodic Gaussian NEB require
zero-temperature occupations.
The open-shell branch points at BIPOLE because that is the AUTO default;
open-shell GDF (UHF / UKS, Gamma + multi-k) also ships and is reachable
with an explicit jk_method="gdf".
5.4 Coexistence¶
The three routes share one infrastructure stack and may be mixed in the same session without re-installation:
S,T,V_{ne}lattice integrals live in C++ behindcompute_overlap_lattice,compute_kinetic_lattice, and the shared Ewald-gauged \(V_{ne}\) helper. All three drivers consume them.nuclear_repulsion_per_cellis the same Ewald-3D nuclear sum for everyone on a 3D system.BasisSetandMoleculeconstructors are shared with the molecular SCF; the same auxiliary-basis manager (vibeqc.aux_basis.make_aux_basis_set) backs both molecular RIJK and periodic GDF.The
.systemmanifest records which J/K route was active, plus its parameters (Ewald omega for BIPOLE, aux basis name +linear_dep_thrfor GDF, plane-wave cutoff and grid shape for GPW / GAPW). A future re-run reproduces the exact route.
6. Worked examples by bonding situation and dimensionality¶
The examples below intentionally cover different bonding regimes because the right route is rarely a function of dimensionality alone. Diffuseness of the valence density, charge transfer, band-gap, and the strength of the long-range Coulomb tail all push you toward different J/K kernels.
All systems use the canonical lattice parameters from
examples/periodic/_systems.py
(Springer Materials).
6.1 Ionic, closed-shell 3D: MgO and NaCl (rocksalt)¶
Ionic rocksalt crystals are the textbook stress test for the periodic Coulomb gauge: charge transfer of order one electron between cation and anion, Madelung sums that diverge under naive truncation, and a wide gap so the SCF itself is well-behaved. Both BIPOLE and GDF are production routes here.
import numpy as np
import vibeqc as vq
ANG2BOHR = 1.0 / 0.529177210903
# MgO FCC primitive (1 Mg + 1 O), a = 4.211 A.
a = 4.211 * ANG2BOHR
lattice = (a / 2.0) * np.array(
[[0.0, 1.0, 1.0],
[1.0, 0.0, 1.0],
[1.0, 1.0, 0.0]]
)
mgo = vq.PeriodicSystem(
3, lattice,
[vq.Atom(12, [0.0, 0.0, 0.0]),
vq.Atom(8, [a / 2.0, a / 2.0, a / 2.0])],
)
basis = vq.BasisSet(mgo.unit_cell_molecule(), "sto-3g")
# Route A: BIPOLE, multi-k 2x2x2 (matches CRYSTAL14 SHRINK 2 baseline).
res_bipole = vq.run_periodic_job(
mgo, basis, method="RHF",
jk_method="bipole",
kpoints=(2, 2, 2),
output="mgo-bipole",
)
# Route B: GDF Gamma-only with the universal JK aux.
res_gdf = vq.run_periodic_job(
mgo, basis, method="RHF",
jk_method="gdf",
aux_basis="def2-universal-jkfit",
output="mgo-gdf",
)
print(f"BIPOLE 2x2x2 : {res_bipole.energy:+.6f} Ha")
print(f"GDF Gamma : {res_gdf.energy:+.6f} Ha")
NaCl (a = 5.64 A) has a much more diffuse valence density on Cl
and so probes aux conditioning more aggressively. Swap the
geometry helpers and rerun; the GDF route may need drop_eta on
the auxiliary basis if the metric is near-singular.
Pick BIPOLE for fixed-cell finite-difference forces, or GDF where its analytic gradient envelope applies. Use neither for variable-cell work.
6.2 Covalent network 3D: diamond and silicon (Fd-3m)¶
Diamond C and silicon are the canonical covalent network crystals: every atom sp3, narrow density between bonded atoms, no charge transfer, indirect band gap of order eV. The lattice vectors are FCC primitive (60-deg angles between the column vectors, not orthogonal axes).
import numpy as np
import vibeqc as vq
ANG2BOHR = 1.0 / 0.529177210903
# Si diamond primitive (2 Si in the rhombohedral cell), a = 5.431 A.
a = 5.431 * ANG2BOHR
lattice = (a / 2.0) * np.array(
[[0.0, 1.0, 1.0],
[1.0, 0.0, 1.0],
[1.0, 1.0, 0.0]]
)
si = vq.PeriodicSystem(
3, lattice,
[vq.Atom(14, [0.0, 0.0, 0.0]),
vq.Atom(14, [a / 4.0, a / 4.0, a / 4.0])],
)
basis = vq.BasisSet(si.unit_cell_molecule(), "sto-3g")
# GDF, multi-k 4x4x4 (closed-shell RHF or RKS / PBE).
res_rks = vq.run_periodic_job(
si, basis,
method="RKS", functional="pbe",
jk_method="gdf",
aux_basis="def2-universal-jkfit",
kpoints=(4, 4, 4),
output="si-pbe",
)
print(f"Si bulk PBE : {res_rks.energy:+.6f} Ha / cell")
For diamond C, swap to Atom(6, ...) and a = 3.567 A. Diamond’s
parity reference at STO-3G with BIPOLE on SHRINK 8 is
\(-74.8771393842\,\text{Ha}\) (delta vs CRYSTAL14: \(-0.145\,\text{mHa}\)).
Covalent crystals are also a clean target for the GPW / GAPW route, which runs a full SCF today: the smooth pseudo-density on the FFT grid represents the bonding region efficiently, and this is where the plane-wave scaling win shows up first as the cell grows.
6.3 Metallic 3D: fcc aluminium with Fermi-Dirac smearing¶
Metals are the second classical stress test for periodic SCF:
partial occupations at the Fermi level, no gap to anchor DIIS,
and integer-occupation aufbau diverges. vibe-qc handles this with
finite-temperature Fermi-Dirac smearing on the multi-k BIPOLE
RKS / RHF path. The driver auto-routes through BIPOLE when
smearing_metallic=True.
import numpy as np
import vibeqc as vq
ANG2BOHR = 1.0 / 0.529177210903
# Al fcc primitive (1 Al), a = 4.05 A.
a = 4.05 * ANG2BOHR
lattice = (a / 2.0) * np.array(
[[0.0, 1.0, 1.0],
[1.0, 0.0, 1.0],
[1.0, 1.0, 0.0]]
)
al = vq.PeriodicSystem(
3, lattice, [vq.Atom(13, [0.0, 0.0, 0.0])],
)
basis = vq.BasisSet(al.unit_cell_molecule(), "sto-3g")
result = vq.run_periodic_job(
al, basis,
method="RKS", functional="pbe",
jk_method="bipole",
kpoints=(8, 8, 8),
smearing_temperature="auto", # ~0.01 Ha for metallic systems
smearing_metallic=True,
output="al-fcc-pbe",
)
print(f"Al fcc PBE : E = {result.energy:+.6f} Ha")
print(f" F = {result.free_energy:+.6f} Ha (= E - T*S)")
print(f" E_f = {result.fermi_level:+.6f} Ha")
Two things to note. First, the meaningful thermodynamic quantity
on a smeared metal is the free energy \(F = E - T S\), not the
total energy; both are reported. Second, smearing_metallic=True
relaxes the gap-closure safety guards that the standard SCF
inserts; on a wide-gap insulator it should stay False (the
default) so an accidental run on the wrong template fails loudly.
For UKS open-shell metals, use the BIPOLE UKS route when you need per-spin
Fermi-Dirac smearing today. The non-BIPOLE multi-k Ewald-UKS path still
raises on positive smearing_temperature so spin-polarized metallic inputs do
not run with silently integer occupations.
6.4 Open-shell metallic 3D: bcc lithium (BIPOLE UHF)¶
Light alkali metals are the simplest place to exercise the open-shell periodic SCF. BIPOLE is the AUTO open-shell route and the one that carries open-shell Fermi-Dirac smearing on the multi-k UKS / RKS path; open-shell GDF and GPW / GAPW also run UHF / UKS (GDF at Gamma and multi-k, GPW / GAPW at Gamma) when selected explicitly.
PeriodicSystem defaults to multiplicity 1. When an odd-electron primitive
cell reaches open-shell SCF with that default, run_periodic_job selects the
lowest parity-compatible multiplicity (normally a doublet); the same rule is
applied after conventional-to-primitive reduction. An explicit multiplicity
is preserved. Restricted RHF and RKS instead reject an odd-electron final cell
and direct the calculation to UHF or UKS.
The run_periodic_job(method="ROHF", jk_method="gpw") route and its
standalone run_periodic_rohf_gpw driver are available for a 3D Gamma-point
spin-pure HF reference, but they keep integer 2/1/0 occupations and are not
electronic-smearing routes. The standalone driver’s smearing_alpha option
is nuclear smoothing, not a metal occupation temperature.
import numpy as np
import vibeqc as vq
from vibeqc.pbc_bipole_uhf import run_pbc_bipole_uhf
a = 6.6 # bohr, bcc Li
sysp = vq.PeriodicSystem(
3, np.eye(3) * a,
[vq.Atom(3, [0.0, 0.0, 0.0])],
)
basis = vq.BasisSet(sysp.unit_cell_molecule(), "sto-3g")
kmesh = vq.monkhorst_pack(sysp, [2, 2, 2], use_symmetry=False)
opts = vq.PeriodicRHFOptions()
opts.lattice_opts.cutoff_bohr = 14.0
opts.use_diis = True
opts.max_iter = 40
opts.initial_guess = vq.InitialGuess.SAD
result = run_pbc_bipole_uhf(sysp, basis, kmesh, opts,
ewald_precision=1e-6)
print(f"E_total = {result.energy:+.6f} Ha <S^2> = {result.s_squared:.4f}")
The full open-shell input lives at
examples/periodic/input-bipole-li-uhf.py.
6.5 Mixed ionic-covalent 3D: ZnO wurtzite (hexagonal cell)¶
ZnO wurtzite mixes polar ionic character (Zn-O charge transfer)
with covalent sp3 bonds in a non-orthogonal hexagonal cell
(gamma = 120 deg). It is the canonical test that the periodic
machinery does not secretly assume cubic axes.
import numpy as np
import vibeqc as vq
ANG2BOHR = 1.0 / 0.529177210903
# ZnO wurtzite (P6_3 m c, #186). a = 3.2495 A, c = 5.2069 A, u = 0.382.
a, c, u = 3.2495 * ANG2BOHR, 5.2069 * ANG2BOHR, 0.382
lattice = np.array([
[a, 0.0, 0.0],
[-a / 2.0, a * np.sqrt(3.0) / 2.0, 0.0],
[0.0, 0.0, c],
]).T
# Two formula units in the conventional hex cell.
unit_cell = [
vq.Atom(30, lattice @ np.array([1/3, 2/3, 0.0])), # Zn
vq.Atom(30, lattice @ np.array([2/3, 1/3, 0.5])),
vq.Atom( 8, lattice @ np.array([1/3, 2/3, u])), # O
vq.Atom( 8, lattice @ np.array([2/3, 1/3, 0.5 + u])),
]
zno = vq.PeriodicSystem(3, lattice, unit_cell)
basis = vq.BasisSet(zno.unit_cell_molecule(), "pob-tzvp")
# GDF would need a matching pob-tzvp-jk aux which is not yet shipped;
# BIPOLE handles pob-TZVP natively without an aux basis.
result = vq.run_periodic_job(
zno, basis,
method="RKS", functional="pbe",
jk_method="bipole",
kpoints=(4, 4, 4),
output="zno-wurtzite-pbe",
)
print(f"ZnO wurtzite PBE : {result.energy:+.6f} Ha")
For wurtzite-class systems on pob-TZVP, BIPOLE is the operational
default until the pob-TZVP JK aux basis is published (see
density_fitting.md).
6.6 Van der Waals 3D: neon fcc (RKS / PBE + D3)¶
Closed-shell rare-gas solids are dominated by dispersion. The HF / pure-GGA part is mostly a sanity check on the periodic SCF; the cohesion comes from the D3 / D4 correction added on top. Both BIPOLE and GDF work here; GDF is cheaper since the system is closed-shell.
import numpy as np
import vibeqc as vq
ANG2BOHR = 1.0 / 0.529177210903
a = 4.43 * ANG2BOHR # Ne fcc conventional cubic
lattice = (a / 2.0) * np.array(
[[0.0, 1.0, 1.0],
[1.0, 0.0, 1.0],
[1.0, 1.0, 0.0]]
)
ne = vq.PeriodicSystem(3, lattice, [vq.Atom(10, [0.0, 0.0, 0.0])])
basis = vq.BasisSet(ne.unit_cell_molecule(), "def2-svp")
result = vq.run_periodic_job(
ne, basis,
method="RKS",
functional="pbe-d3bj", # PBE + D3(BJ) dispersion
jk_method="gdf",
aux_basis="def2-svp-jk",
kpoints=(2, 2, 2),
output="ne-fcc-pbe-d3bj",
)
print(f"Ne fcc PBE+D3 : {result.energy:+.6f} Ha")
vdW solids are also where the opt-in nature of GAPW’s all- electron augmentation matters most: relative cohesive energies on the meV scale are easy to get wrong with too-coarse a smooth grid, so a CP2K parity sweep on Ne / Ar is part of the M3 acceptance set in the GAPW design doc.
6.7 1D: trans-polyene chain (Peierls distortion)¶
A 1D chain is the cleanest demonstration of why dimensionality matters: the 3D Madelung problem vanishes, GDF runs natively without any compensating-charge machinery, and Peierls distortion opens a gap in the otherwise metallic uniform chain. Both the uniform and the distorted geometries should run on the same code path.
import numpy as np
import vibeqc as vq
# Trans-polyacetylene-like H-H chain. Column 0 is the periodic
# axis; columns 1 and 2 are vacuum (>= 25 bohr decouples images).
a = 4.0 # bohr, lattice period
delta = 0.20 # bohr, Peierls displacement (=0 for the uniform chain)
sysp = vq.PeriodicSystem(
dim=1,
lattice=np.diag([a, 30.0, 30.0]),
unit_cell=[vq.Atom(1, [0.0, 0.0, 0.0]),
vq.Atom(1, [1.4 + delta, 0.0, 0.0])],
)
basis = vq.BasisSet(sysp.unit_cell_molecule(), "sto-3g")
result = vq.run_periodic_job(
sysp, basis,
method="RHF",
jk_method="gdf",
kpoints=(8, 1, 1),
output="h-chain-peierls",
)
print(f"H-chain (delta = {delta:+.2f} bohr) : {result.energy:+.6f} Ha")
The matching bandstructure / DOS workflow lives at
examples/periodic/input-h-chain-bands.py;
the uniform vs Peierls comparison at
examples/periodic/input-h-chain-peierls.py.
6.8 2D: graphene sheet (semi-metal) and a graphene nanoribbon¶
Graphene at half-filling is the textbook 2D Dirac semimetal: the Fermi level sits exactly at the K-point band crossing, so any finite-temperature smearing > 0 introduces partial occupation in the pi* band. A Gamma-only single-point will still run cleanly because the cone is not at Gamma.
import numpy as np
import vibeqc as vq
# Graphene sheet, primitive hexagonal cell, a = 2.46 A in-plane.
# slab_2d takes only the two in-plane vectors: no vacuum, real-z atoms.
ANG2BOHR = 1.0 / 0.529177210903
a = 2.46 * ANG2BOHR
graphene = vq.slab_2d(
[a, 0.0, 0.0],
[a / 2.0, a * np.sqrt(3.0) / 2.0, 0.0],
[vq.Atom(6, [0.0, 0.0, 0.0]),
vq.Atom(6, [a / 2.0, a * np.sqrt(3.0) / 6.0, 0.0])],
)
basis = vq.BasisSet(graphene.unit_cell_molecule(), "def2-svp")
result = vq.run_periodic_job(
graphene, basis,
method="RKS", functional="pbe",
jk_method="auto", # dim=2 -> SLAB_EWALD_2D
kpoints=(6, 6, 1), # in-plane mesh; 1 along the normal
output="graphene-pbe",
)
print(f"Graphene PBE : {result.energy:+.6f} Ha / cell")
For an armchair graphene nanoribbon (effectively a 1D system
embedded in a 2D sheet of vacuum), the same code path holds with
dim=1 and only the ribbon-axis lattice column physical.
Low-dimensional cells get no AUTO convergence profile
The AUTO convergence profiler’s covalent / ionic / metallic signals are
3D-only: they are gated on a tight-cell test that requires dim == 3.
Every dim=1 and dim=2 cell therefore reports
profile: unknown
- no low-dimensional branch (dim=2, ...) -- the covalent/ionic/metallic
signals are 3D-only, so this cell is unclassified by construction,
not judged inconclusive; a semimetallic or small-gap sheet needs an
explicit smearing choice
and resolves smearing_temperature = 0. That default is wrong for a
semimetal: graphene at half-filling cannot converge on integer
occupations, and a small-gap sheet may not either. Pass smearing_method
and smearing_temperature explicitly for such systems on routes that
support them. Note that the explicit closed-shell slab GDF route
currently rejects smearing outright (NotImplementedError), so a 2D
semimetal has no smeared path there yet.
Band occupations on the multi-k slab GDF route are filled under one
global Fermi level across the whole mesh, not per k point. When the
bands overlap, that fill is fractional at the Fermi-degenerate group and
the .out reports occupation class = fractionally occupied / smeared
rather than a zero-temperature band gap.
A negative band gap is printed, not clamped
gap (indirect) is reported as CBM - VBM with no floor applied. If
the value comes out negative, the band ordering across the mesh is
inverted and the line carries a negative: band ordering inverted across the mesh annotation. Earlier releases clamped this at 0.000000 Ha,
which made an inverted ordering indistinguishable from a genuine zero
gap. Treat a negative gap as a diagnostic to investigate (CLAUDE.md § 7),
not as a physical result.
6.9 Slab: MgO(001) 5-layer surface¶
A slab is a genuinely 2D periodic system: the in-plane lattice vectors
are the surface mesh, and there is nothing periodic along the normal.
Give vq.slab_2d those two vectors and the atoms at their real z.
No vacuum is needed, and none is used: the third lattice column is
synthesized for AO and spglib bookkeeping, and the SCF energy does not
depend on it.
import numpy as np
import vibeqc as vq
ANG2BOHR = 1.0 / 0.529177210903
a = 4.211 * ANG2BOHR
# MgO(001) 5-layer slab, primitive 1x1 surface cell. No vacuum: the two
# in-plane vectors are the whole periodicity, and the layers keep their
# real z.
in_plane = a / np.sqrt(2.0)
layers = []
for k, layer_z in enumerate(np.linspace(-2.0 * a, 2.0 * a, 5)):
if k % 2 == 0:
layers.append(vq.Atom(12, [0.0, 0.0, layer_z]))
layers.append(vq.Atom( 8, [in_plane / 2.0, in_plane / 2.0, layer_z]))
else:
layers.append(vq.Atom( 8, [0.0, 0.0, layer_z]))
layers.append(vq.Atom(12, [in_plane / 2.0, in_plane / 2.0, layer_z]))
slab = vq.slab_2d([in_plane, 0.0, 0.0], [0.0, in_plane, 0.0], layers)
basis = vq.BasisSet(slab.unit_cell_molecule(), "pob-tzvp")
result = vq.run_periodic_job(
slab, basis,
method="RKS", functional="pbe",
jk_method="auto", # dim=2 -> SLAB_EWALD_2D
kpoints=(4, 4, 1), # in-plane mesh; 1 along the normal
output="mgo-001-slab",
)
print(f"MgO(001) 5-layer : {result.energy:+.6f} Ha / cell")
Warning
The pre-v0.16 bulk GDF path was wrong on dim=2: it summed the Coulomb
interaction as if the layers were stacked a3 apart, so the nuclear
repulsion depended on the k-mesh and the total energy could be off by
thousands of Hartree. The current explicit slab-GDF route is a different
implementation with a finite 2D Coulomb metric and rigorous Parry-gauge
one-electron terms. It is closed-shell only; analytic gradients ship
since 2026-07-30.
Surface slabs are the use case where GPW / GAPW’s scaling tells: the
smooth-grid Hartree-J cost is set by the cell volume, which scales
linearly with slab thickness, while the BIPOLE direct-K cost grows
quadratically with the number of in-plane atoms. GPW / GAPW run a full SCF
today (Gamma RHF / ROHF / ROKS / RKS / UHF / UKS, multi-k pure-DFT
RKS / ROKS / UKS), but
GPW/GAPW do not accept
a dim=2 slab. The general slab route is SLAB_EWALD_2D; closed-shell
energy and relaxation work may explicitly use the slab-truncated GDF
route (analytic gradients since 2026-07-30).
6.10 Method-choice summary by bonding regime¶
System type |
Recommended first choice |
Notes |
|---|---|---|
Ionic 3D bulk (MgO, NaCl, LiH) |
GDF (closed-shell) or BIPOLE (forces / opt) |
Both cleanly handle the Madelung gauge. |
Covalent 3D bulk (diamond, Si) |
GDF for cost, BIPOLE for CRYSTAL parity |
GPW / GAPW is a natural smooth-density fit and runs full SCF today. |
Metallic 3D bulk (Al, Cu) |
BIPOLE + smearing ( |
RKS/UHF/UKS BIPOLE support Fermi-Dirac; BIPOLE RHF remains gated. |
Open-shell 3D (Li bcc, magnetic oxides) |
BIPOLE UHF / UKS (AUTO) |
GDF UHF / UKS (Gamma + multi-k) and GPW / GAPW (Gamma) also run open-shell; ROHF and ROKS are available on Ewald-3D (Gamma + multi-k), while maintained-preview GPW provides Gamma ROHF and Gamma or multi-k pure-DFT ROKS with integer occupations. |
Mixed ionic-covalent (ZnO, TiO2, Al2O3) |
BIPOLE on pob-TZVP, GDF on def2-*-jk |
pob-TZVP-jk aux is on the roadmap. |
Van der Waals 3D (Ne, Ar, molecular crystals) |
GDF + dispersion correction |
GPW / GAPW carry D3(BJ) too; their meV-cohesion CP2K sign-off is still broadening. |
1D wires (H chain, polyacetylene) |
GDF (any zeta) |
AUTO uses GDF for closed and open shell; public BIPOLE rejects dim=1. |
2D sheets (graphene, h-BN) |
SLAB_EWALD_2D (AUTO); explicit GDF for closed-shell energy scaling |
Both are vacuum-free and a3-invariant. Slab GDF is full-tuple and zero-temperature; closed-shell analytic forces ship ( |
2D surface slabs |
SLAB_EWALD_2D (AUTO); explicit GDF for closed-shell energies + relaxation |
No vacuum needed. Plain closed-shell relaxation: explicit GDF with |
7. Surface reactions: adsorption, TS search, vibrational analysis¶
Surface chemistry (adsorption energies, reaction barriers, transition states, intermediates, reaction-path scans) is the flagship workflow vibe-qc is built around. Bulk single-points are infrastructure for it; molecular SCF is infrastructure for it. This section walks the end-to-end stack: slab setup, adsorbate placement, geometry relaxation, NEB reaction path, vibrational analysis at the transition state.
7.1 Slab setup: dim = 2 is the physical model¶
There are two ways to make a slab look “non-periodic in the surface normal direction”. They are not equally correct.
dim = 2 (the physical model, and the default). Give the two in-plane lattice vectors and put the atoms at their real Cartesian
z. There is no vacuum gap. Build it withvq.slab_2d(a1, a2, atoms)orvq.slab(...), which returnsdim=2.jk_method="auto"resolves toCoulombMethod.SLAB_EWALD_2D, the rigorous vacuum-free 2D Ewald gauge (Parry 1975; de Leeuw and Perram 1979). The total energy is provably invariant to the synthesized third lattice column and the nuclear repulsion is k-mesh independent. Available for RHF / RKS / UKS at Gamma and multi-k. Analytic gradients in dim = 2 ship on the closed-shell slab-GDF route (2026-07-30):jk_method="gdf"withoptimize=True(or the drivers’compute_gradient=True) relaxes atoms on the slab analytic-gradient objective. Still not available in dim = 2: gradients on the directslab_ewald_2droute itself, NEB / FD Hessians / freeze masks, Fermi-Dirac smearing,UHF, and the bulk J/K routes (bipole,gpw,gapw,rijcosx), all of which raise rather than return a wrong number.dim = 3 with thick vacuum (the plane-wave-code convention). Make the c-axis large enough that the slab images do not see each other (20 to 30 bohr of vacuum on each side), and run the whole calculation in 3D. Build it with
vq.slab(..., periodic_z=True). Production finite-difference forces work through BIPOLE; analytic gradients remain a gated preview. Smearing is available, and the periodic ASE adapter (vibeqc.ase_periodic) accepts the geometry without special-casing. The cost is real: you pay for one extra Bloch sum in the normal direction, and a residual slab-slab dipole-image interaction shifts the absolute energy by an amount that grows with the surface dipole and shrinks only as the vacuum grows. It cancels in differences such as binding energies only to the extent that the dipole is the same on both sides.
Warning
Do not build a dim=2 cell and then hand it to a bulk J/K builder.
A slab run through a 3D Coulomb gauge is treated as a crystal of sheets
stacked a3 apart, so its energy depends on a3 and on the k-mesh.
vibe-qc now raises rather than letting that happen. Before v0.15.32 it
did not, and jk_method="auto" silently chose GDF.
Which to use. For single points and reference energies, use dim = 2:
it is the correct physics and costs less. Explicit closed-shell slab GDF also
supports fixed-cell relaxation. For freeze masks, periodic Gaussian NEB,
open shell, or metallic-smearing single points, use dim = 3 + thick vacuum today and accept the image error. Do not combine positive smearing
with BIPOLE optimization or periodic Gaussian NEB; both routes fail closed
until their result schemas represent the Mermin free-energy objective.
Periodic BIPOLE Hessians fail closed in every dimension.
import numpy as np
import vibeqc as vq
ANG2BOHR = 1.0 / 0.529177210903
def build_pt111_slab(n_layers=4, n_xy=2, vacuum_bohr=20.0):
"""Pt(111) n_xy x n_xy x n_layers slab. dim = 3 with thick vacuum."""
a_pt = 3.92 * ANG2BOHR / np.sqrt(2.0) # nearest-neighbour, bohr
in_plane = a_pt * n_xy
layer_spacing = a_pt * np.sqrt(2.0 / 3.0) # FCC (111) interlayer
# Hex 2D mesh in-plane, c-axis = slab + vacuum.
lattice = np.array([
[in_plane, 0.0, 0.0],
[in_plane / 2.0, in_plane * np.sqrt(3.0) / 2.0, 0.0],
[0.0, 0.0, n_layers * layer_spacing + 2 * vacuum_bohr],
]).T
atoms = []
for layer in range(n_layers):
z = layer * layer_spacing + vacuum_bohr
# ABCABC stacking offset per layer.
shift = (layer % 3) * np.array([in_plane / 3.0,
in_plane * np.sqrt(3.0) / 6.0, 0.0])
for i in range(n_xy):
for j in range(n_xy):
pos = (i * np.array([a_pt, 0, 0])
+ j * np.array([a_pt / 2.0,
a_pt * np.sqrt(3.0) / 2.0, 0])
+ shift
+ np.array([0, 0, z]))
atoms.append(vq.Atom(78, list(pos)))
return vq.PeriodicSystem(dim=3, lattice=lattice, unit_cell=atoms)
slab = build_pt111_slab(n_layers=4, n_xy=2, vacuum_bohr=20.0)
print(f"{len(slab.unit_cell)} Pt atoms in 2x2x4 slab")
For convenience you can also build a slab through ASE and convert:
from ase.build import fcc111
from vibeqc.ase_periodic import atoms_to_periodic_system
ase_slab = fcc111("Pt", size=(2, 2, 4), vacuum=10.0, a=3.92)
ase_slab.pbc = (True, True, True) # the dim = 3 + vacuum convention
slab = atoms_to_periodic_system(ase_slab)
atoms_to_periodic_system currently requires pbc.sum() == 3,
which is exactly the convention above. Slabs declared with
pbc = (True, True, False) still fail closed at the boundary even
though the dim = 2 slab-GDF gradient now exists (2026-07-30):
mapping ASE’s 2D pbc onto the slab route’s synthesized-normal
convention is a boundary-convention decision that has not been
made, so the constraint stays until it is. Native dim = 2
relaxation goes through run_periodic_job(jk_method="gdf", optimize=True) instead.
7.2 Adsorbate placement¶
vibe-qc ships a native, pure-Python slab + adsorbate builder
(vibeqc.slab + vibeqc.place_adsorbate) that does not
depend on ASE at runtime. See
slabs_and_adsorbates.md for the full
reference. Quick form:
import vibeqc as vq
slab, info = vq.slab("Pt", "fcc", (1, 1, 1), n_layers=4, vacuum=10.0,
supercell=(2, 2), periodic_z=True)
# periodic_z=True -> dim=3 with a real vacuum gap. Freeze masks, NEB,
# open shell, and smeared single points use the dim=3 BIPOLE stack, but
# positive smearing cannot be combined with BIPOLE optimization or NEB.
# dim=2 analytic forces exist only on the closed-shell slab-GDF route
# (run_periodic_job(jk_method="gdf", optimize=True)).
slab_with_h2 = vq.place_adsorbate(slab, "H2", site="top")
Built-in adsorbate library: H, H2, N2, O2, CO, OH, NH, NH3, H2O,
CH4. Site names: "top" / "bridge" / "hollow" /
"fcc-hollow" / "hcp-hollow" / "long-bridge" /
"short-bridge", plus explicit (x, y) coordinates.
info.bottom_layer_indices(n) is the convenience accessor
that pairs with the freeze mask in § 7.3.
The ASE bridge is still available if you prefer ASE builders:
from ase.build import add_adsorbate, fcc111, molecule
ase_slab = fcc111("Pt", size=(2, 2, 4), vacuum=10.0, a=3.92)
add_adsorbate(ase_slab, molecule("H2"), height=2.0, position="ontop")
ase_slab.pbc = (True, True, True)
slab_with_h2 = vq.ase_periodic.atoms_to_periodic_system(ase_slab)
For charged adsorbates, set charge= and multiplicity= on
atoms_to_periodic_system (or, with the native builder, on the
PeriodicSystem constructor directly).
7.3 Geometry relaxation¶
Fixed-cell BIPOLE atom relaxation goes through
vibeqc.bipole_optimize.relax_atoms, using finite-difference forces by
default. A freeze_indices= mask is available for fully 3D periodic systems,
and VibeQCPeriodic supplies the ASE Calculator surface for the same
fully periodic boundary. Explicit closed-shell slab GDF instead supports
unmasked dim=2 analytic-gradient optimization through
run_periodic_job(jk_method="gdf", optimize=True).
Do not use the former Pt/POB example as a runnable recipe. The bundled POB
coverage for Pt is ECP-paired and the public BIPOLE all-electron guard rejects
that combination. Also, relax_atoms has no dispersion objective, so a
compound functional spelling such as "pbe-d3bj" is not a substitute for a
separately implemented dispersion force. Choose a basis with a complete
all-electron record for every element and a BIPOLE-supported functional.
Long-range-corrected range-separated hybrids, VV10/nonlocal correlation, and
double hybrids fail closed. Converge the k-mesh and lattice cutoffs for the
actual system.
7.4 Reaction-path search via climbing-image NEB¶
vibe-qc ships a native Nudged Elastic Band driver, vibeqc.run_neb, that
handles molecular and bounded periodic systems through one entry point. See
neb.md for the executable light-element periodic example.
Periodic Gaussian NEB fails closed before image evaluation unless the system
is dim=3, every element has a supported all-electron basis, and no periodic
dispersion correction is requested. POB basis names, ECP metadata or paired
bases, dim=1/dim=2, and dispersion_params are rejected. These guards mean
the Pt/POB/D3 sketch formerly shown here was not a runnable production route.
Two flavours of NEB matter for surface chemistry:
Plain NEB (
climbing_image=False). Relaxes the chain onto the MEP but does not pin the highest-energy image to the saddle; the TS is interpolated from the band, which is approximate.Climbing-image NEB (
climbing_image=True, Henkelman, Uberuaga, Jonsson 2000). The highest-energy image is pushed along the tangent to climb up to the saddle point exactly. Use this for any production barrier number.
The ASE NEB on top of the molecular VibeQC calculator is still
the right pattern for molecule-in-vacuum reaction paths
(precedent: examples/workflows/input-nh3-umbrella-neb.py
for NH3 umbrella inversion). For periodic systems, use native run_neb only
inside its declared all-electron, no-dispersion, 3D Gaussian envelope.
7.5 Transition-state characterisation: imaginary modes¶
A true first-order saddle is normally certified by one imaginary normal mode
along the reaction coordinate. Periodic BIPOLE Hessian requests now fail
closed before SCF because the former construction differentiated an isolated
unit-cell Hamiltonian rather than the executed periodic energy. Do not use a
dim=3 vacuum cell or a frozen subset as a workaround. At present, obtain a
periodic Hessian from a separately validated route before attaching ZPE or
thermal corrections to a BIPOLE NEB barrier.
7.6 Pt(111) workflow status¶
The Pt(111) geometry builders remain useful for constructing and inspecting candidate structures. There is currently no supported end-to-end native Pt/POB/D3 recipe: the basis/ECP guard rejects that Gaussian combination, periodic Gaussian NEB rejects dispersion, and periodic BIPOLE Hessians fail closed. Treat these as explicit method boundaries, not knobs to bypass.
7.7 Recommended defaults for surface-reactions runs¶
Knob |
Default |
Reason |
|---|---|---|
|
|
BIPOLE is the production FD force route for closed- and open-shell periodic systems, and it needs dim=3. On a dim=2 slab, AUTO selects SLAB_EWALD_2D. |
|
2 for physical slab single points and supported closed-shell GDF relaxation; 3 with converged vacuum for smearing, freeze masks, and periodic Gaussian NEB |
Slab GDF analytic gradients ship. Periodic Gaussian NEB remains 3D-only. |
|
A basis with a complete all-electron record for every element |
POB and ECP-paired bases are rejected by periodic Gaussian NEB; converge the chosen basis for the target chemistry. |
|
A BIPOLE-supported semilocal, global-hybrid, or validated screened-hybrid functional for relaxation/NEB; dispersion only on routes that document matching forces |
Long-range-corrected range-separated hybrids, VV10/nonlocal correlation, and double hybrids fail closed. |
|
|
Standard slab Brillouin-zone sampling; one k-point in the normal direction. |
|
Converge for the chosen basis and system |
The required real-space extent is basis and geometry dependent; do not inherit the former Pt/POB sketch’s cutoff. |
|
|
The SCF drivers support smeared metals, but the BIPOLE optimizer and periodic Gaussian NEB reject positive temperature until their outputs distinguish the Mermin objective from internal energy. |
|
\(5 \cdot 10^{-4}\) Ha/bohr (production: \(1 \cdot 10^{-4}\)) |
Standard tightness; ASE’s BFGS |
NEB images |
7 (5 intermediate) |
Enough resolution to resolve a single saddle; expand to 9-11 for multi-step paths. |
NEB optimiser |
quick-min (default in |
Quick-min is the velocity-Verlet-style integrator the native NEB driver uses; robust on noisy SCF gradients and parallelises trivially per image. |
Reaction-coord scan (cheap first pass before NEB) |
|
Single-coordinate sweep with per-step warm-start; resolves the rough barrier shape in O(N_points) SCFs without an NEB band. Use it to choose |
7.8 Current caveats and gaps¶
The honest list of what still needs work. Tracked in
handovers/HANDOVER_SURFACE_REACTIONS.md;
items marked LANDED below have been crossed off there too.
VibeQCPeriodicCalculator wrapper. LANDED. Useatoms.calc = VibeQCPeriodic(...)for fully periodic ASEAtoms. Directpbc.sum() != 3ASE conversion remains outside this wrapper.dim = 2 production forces. LANDED for explicit closed-shell GDF.
run_periodic_job(jk_method="gdf", optimize=True)uses the analytic slab gradient. The directSLAB_EWALD_2Droute itself, slab open shell, freeze masks, and NEB remain unsupported.dim = 2 Fermi-Dirac smearing. Open.
smearing_temperatureis not supported by the slab-GDF envelope, while GPW / GAPW / RIJCOSX do not accept a slab. A metallicdim = 2slab therefore cannot be smeared today. Use dim = 3 + thick vacuum for metal surfaces that need it.Atom-freeze mask in
relax_atoms. LANDED 2026-05-25 in commiteb83c6c7. Userelax_atoms(..., freeze_indices=[...])(see § 7.3);SlabInfo.bottom_layer_indices(n)is the convenience accessor.Periodic NEB native to vibe-qc. LANDED 2026-05-25 in commits
d47a3b55…0395159f(NEB increments 1-5). Public API:vibeqc.run_neb(reactant, product, basis, ..., kpoints=..., freeze_indices=..., climbing_image=True)returningNEBResultwith.write_qvf(path)for vibe-view rendering. Reference:neb.md.Periodic BIPOLE Hessian. Open. Requests fail closed because the former construction did not differentiate the executed periodic Hamiltonian; a frozen-index option cannot repair that method boundary.
Surface-dipole correction. Open (lowest priority). Polar slabs (terminations with net dipole, e.g. polar ZnO surfaces) need a dipole correction to cancel the spurious slab-slab image interaction in the dim = 3 + vacuum convention. The workaround is symmetric (non-polar) slab termination.
The remaining open gaps include slab smearing/open shell, broader NEB basis
and dispersion support, a correct periodic Hessian, and polar-slab dipole
corrections. The
design_periodic_gapw.md plane-wave
route in v0.10.x is the other half of the long-term answer because
slab supercells with hundreds of atoms are where GPW / GAPW’s
\(\mathcal{O}(N_g \log N_g)\) Hartree-J scaling overtakes both
BIPOLE and GDF.
8. Reproducibility and provenance¶
vibe-qc records every routing choice in the run output so a paper or a later re-run can reconstruct the calculation without relying on AUTO heuristic versions:
The
.outbanner names the resolved method (never the literal"auto").The
.systemmanifest records Ewald omega (BIPOLE), aux basis name + linear-dependence threshold (GDF), and the plane-wave cutoff plus grid shape (GPW / GAPW).The
.referencesand.bibtexsiblings carry the per-method citations through the citation database. Pisani-Dovesi-Roetti 1988 / Saunders 1992 / Dovesi 2014 / Erba 2023 fire on the registered BIPOLE route; Whitten 1973 / Dunlap 1979 / Eichkorn 1995 / Weigend 2006 / Sun 2017 fire on the GDF route; Lippert-Hutter 1999 / VandeVondele 2005 / Krack-Parrinello 2000 / Blochl 1994 / Lin 2016 fire on the GPW / GAPW route.
If you publish work that used vibe-qc, the references block in
the .out file (plus the BibTeX sibling) is the copy-paste
surface; cite the method paper for the route you actually ran,
not just the catch-all CRYSTAL or CP2K citation.
9. Roadmap pointers¶
BIPOLE Phase 6a / 6b / 7: redesign the quartet far-pair branch around the exact three-translation Fock domain before any activation, complete the higher-l
compute_ext_el_spheropole, and pin the numerical parity sign-off on the 15-system demo suite. Status inbipole.md.GDF open-shell: native UHF / UKS drivers have landed at Gamma (
run_pbc_gdf_uhf/run_pbc_gdf_uks) and multi-k (run_kuhf_periodic_gdf/run_kuks_periodic_gdf). Analytic gradients cover the production rsgdf Γ ladder (RHF/RKS/UHF/UKS), the multi-k KRHF/KRKS/KUHF/KUKS drivers, andrun_periodic_job(optimize=True)relaxes GDF-routed jobs on that same GDF objective; remaining gradient work is stress/variable-cell plus the guarded envelopes (screened fits, smearing, IBZ, range separation).GPW / GAPW: M2 (Gamma SCF) and M3 (GAPW dual grid, multi-k RKS, open-shell) have landed; M4 metallic refinements with smearing and M5 ACE-decorated K + on-demand PAW dataset fetcher remain. Track in
design_periodic_gapw.md.RIJCOSX: Gamma RHF, vacuum-padded Gamma RKS/UHF/UKS, and true multi-k RHF / RKS / UHF / UKS ship, including the post-convergence one-center replacement on every route, weighted full-BZ quadratures, and HSE-type screened hybrids (hse06-class, closed-shell) on the multi-k backend. The screened exchange uses the physical erfc kernel with its finite G=0 mode included (the VASP/CRYSTAL convention shared with the BIPOLE screened route); no exxdiv shift applies. Remaining work includes tight-cell parity for the dedicated Gamma K, open-shell multi-k screened hybrids, and the periodic analytic gradient.
Top-level RSGDF and CFMM: enum reserved; the standalone
jk_method="rsgdf"/"cfmm"routes are not implemented. (The internalgdf_method="rsgdf"backend that the GDF route uses for tight ionic cells is shipped and is the production default, see § 3.2.1.)
See also¶
bipole.md: BIPOLE driver reference (phases, options, gradients, optimisation).density_fitting.md: molecular RIJ / RIJK / RIJCOSX and the JKBuilder dispatch that GDF reuses.multi_k_scf.md: multi-k SCF surface (BIPOLE and GDF), smearing for metals, and the multi-k GDF roadmap.ewald.md: the Ewald primitives that the one-electron and the long-range J builds share.k_points.md: Monkhorst-Pack mesh generation and BZ sampling.crystal_lattices.md: the 14 Bravais lattices with worked examples.citations.md: how method routing produces the per-run references block.design_native_gdf.md: design walkthrough for the native periodic GDF Lpq construction (modrho compensation, aux conditioning, Cholesky robustness).design_periodic_gapw.md: GAPW design doc, milestone breakdown, PAW dataset license analysis.